TF Information

Gfo_R012339 *(Geospiza fortis)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00046 (Homeobox)	IPR001356	Gfo_R012339	T226219_2.00	GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
exd M06487_2.00	Drosophila melanogaster	YRTCAAAN	NTTTGAYR	B1H Mathelier et al.(2014) MA0222.1	0.635	0.737
exd M06243_2.00	Drosophila melanogaster	YRTCAAAN	NTTTGAYR	B1H Zhu et al.(2011) Exd_Cell_FBgn0000611	0.635	0.737
exd M06244_2.00	Drosophila melanogaster	NWRNWYNAAA	TTTNRWNYWN	B1H Zhu et al.(2011) exd_FlyReg_FBgn0000611	0.635	0.737
exd M06245_2.00	Drosophila melanogaster	NDTGAYRW	WYRTCAHN	B1H Zhu et al.(2011) exd_SOLEXA_2_FBgn0000611	0.635	0.737
exd M06246_2.00	Drosophila melanogaster	NNDTGAYR	YRTCAHNN	B1H Zhu et al.(2011) Exd_SOLEXA_FBgn0000611	0.635	0.737
PBX2 M08134_2.00	Homo sapiens	NWGAKTGACABN	NVTGTCAMTCWN	ChIP-seq Mathelier et al.(2014) MA1113.1	0.635	0.719
PBX2 M09165_2.00	Homo sapiens	KRVHKTGATTGAWKN	NMWTCAATCAMDBYM	Misc Kulakovskiy et al.(2013) PBX2_HUMAN.H11MO.0.C	0.635	0.719
Pbx2 M09199_2.00	Mus musculus	KRVHKTGATTGAWKN	NMWTCAATCAMDBYM	Misc Kulakovskiy et al.(2013) PBX2_MOUSE.H11MO.0.C	0.635	0.719
Pbx1 M00513_2.00	Mus musculus	NNDKANNNN	NNNNTMHNN	PBM Berger et al.(2008) Pbx1_3203	0.635	0.702
pbx4 M02110_2.00	Tetraodon nigroviridis	TTGAYGDV	BHCRTCAA	PBM Weirauch et al.(2014) pTH6425	0.635	0.702
PBX1 M05362_2.00	Homo sapiens	NTGATKGAYR	YRTCMATCAN	SELEX Yin et al.(2017) PBX1_eDBD_HT-SELEX	0.635	0.702
PBX1 M05364_2.00	Homo sapiens	DTGMTKGRYN	NRYCMAKCAH	SELEX Yin et al.(2017) PBX1_FL_HT-SELEX	0.635	0.702
PBX1 M02685_2.00	Homo sapiens	WWTGATTGATND	HNATCAATCAWW	SELEX Mathelier et al.(2014) MA0070.1	0.635	0.702
PBX1 M09164_2.00	Homo sapiens	DGABTGRCRG	CYGYCAVTCH	Misc Kulakovskiy et al.(2013) PBX1_HUMAN.H11MO.0.A	0.635	0.702
PBX1 M09561_2.00	Homo sapiens	TGABTGACAGSC	GSCTGTCAVTCA	Misc Heinz et al.(2010) MCF7-PBX1_GSE28007	0.635	0.702
PBX1 M10748_2.00	Homo sapiens	WTKATTRDT	AHYAATMAW	Transfac Matys et al.(2006) V$PBX1_01	0.635	0.702
PBX1 M10749_2.00	Homo sapiens	DNHTTGATTGATKDB	VHMATCAATCAADNH	Transfac Matys et al.(2006) V$PBX1_02	0.635	0.702
PBX1 M10750_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PBX1_03	0.635	0.702
PBX1 M10751_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PBX1_05	0.635	0.702
PBX1 M10752_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PBX1_10	0.635	0.702
PBX1 M10753_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PBX1_Q3	0.635	0.702
PBX1 M05363_2.00	Homo sapiens	DTGAKKGAYG	CRTCMMTCAH	SELEX Yin et al.(2017) PBX1_eDBD_Methyl-HT-SELEX	0.635	0.702
PBX1 M05365_2.00	Homo sapiens	MRTCAATCMH	DKGATTGAYK	SELEX Yin et al.(2017) PBX1_FL_Methyl-HT-SELEX	0.635	0.702
Pbx3 M09205_2.00	Mus musculus	BBBTGATTGRYNDN	NHNRYCAATCAVVV	Misc Kulakovskiy et al.(2013) PBX3_MOUSE.H11MO.0.A	0.633	0.702
For this family, TFs with SR scores > 0.599* will likely have a similar motif*