Gfo_R015931 (Geospiza fortis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gfo_R015931 T226246_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Irx3
M00453_2.00
Mus musculus
NNDACAHNNN

NNNDTGTHNN
PBM
Berger et al.(2008)
Irx3_0920
0.867 1.000
Irx3
M00454_2.00
Mus musculus
NNDACWHN

NDWGTHNN
PBM
Berger et al.(2008)
Irx3_2226
0.867 1.000
Irx3
M03266_2.00
Mus musculus
WWTKTCATGTWR

YWACATGAMAWW
SELEX
Jolma et al.(2013)
Irx3_1
0.867 1.000
IRX1
M05283_2.00
Homo sapiens
DDCRHNNNNNNNNDYGHH

DDCRHNNNNNNNNDYGHH
SELEX
Yin et al.(2017)
IRX1_eDBD_HT-SELEX
0.867 1.000
IRX3
M05319_2.00
Homo sapiens
DACAHGNWWWWNCDTGTH

DACAHGNWWWWNCDTGTH
SELEX
Yin et al.(2017)
IRX3_eDBD_HT-SELEX
0.867 1.000
IRX1
M05284_2.00
Homo sapiens
NNCRHNNNNNNNNDYVHN

NDBRHNNNNNNNNDYGNN
SELEX
Yin et al.(2017)
IRX1_eDBD_Methyl-HT-SELEX
0.867 1.000
IRX3
M05320_2.00
Homo sapiens
DACRYRHNWWNDYKCGTW

WACGMRHNWWNDYRYGTH
SELEX
Yin et al.(2017)
IRX3_eDBD_Methyl-HT-SELEX
0.867 1.000
mirr
M06514_2.00
Drosophila melanogaster
WWACA

TGTWW
B1H
Mathelier et al.(2014)
MA0233.1
0.834 0.947
mirr
M06305_2.00
Drosophila melanogaster
NDNWWACA

TGTWWNHN
B1H
Zhu et al.(2011)
Mirr_Cell_FBgn0014343
0.834 0.947
mirr
M06306_2.00
Drosophila melanogaster
DDWACA

TGTWHH
B1H
Zhu et al.(2011)
Mirr_SOLEXA_FBgn0014343
0.834 0.947
SNAPOd2T00005194001
M02229_2.00
Oikopleura dioica
NNTACATGTDN

NHACATGTANN
PBM
Weirauch et al.(2014)
pTH5976
0.810 0.772
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R015931 Homeodomain 2 58

Links

Other Homeodomain family TFs
Other Geospiza fortis TFs

291 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29613.m000377 Ricinus communis 29613.m000377 I 0.000
29613.m000379 Ricinus communis 29613.m000379 I 0.000
Aquca_014_00855 Aquilegia coerulea Aquca_014_00855 I 0.000
AT2G42040 Arabidopsis thaliana AT2G42040 D 0.000
BGIOSGA005516 Oryza indica BGIOSGA005516 I 0.000
BGIOSGA022518 Oryza indica BGIOSGA022518 I 0.000
Bo3g035920 Brassica oleracea Bo3g035920 I 0.000
Bo4g014690 Brassica oleracea Bo4g014690 I 0.000
Bo4g191280 Brassica oleracea Bo4g191280 I 0.000
Bostr.25993s0574 Boechera stricta Bostr.25993s0574 I 0.000
Bra000251 Brassica rapa Bra000251 I 0.000
Bra004667 Brassica rapa Bra004667 I 0.000
Bra016897 Brassica rapa Bra016897 I 0.000
BRADI1G46270 Brachypodium distachyon BRADI1G46270 I 0.000
Cagra.13389s0020 Capsella grandiflora Cagra.13389s0020 I 0.000
Carubv10023878m.g Capsella rubella Carubv10023878m.g I 0.000
cassava31648.valid.m1 Manihot esculenta cassava31648.valid.m1 I 0.000
cassava36463.valid.m1 Manihot esculenta cassava36463.valid.m1 I 0.000
cassava36464.valid.m1 Manihot esculenta cassava36464.valid.m1 I 0.000
Ca_07320 Cicer arietinum Ca_07320 I 0.000
Ciclev10012160m.g Citrus clementina Ciclev10012160m.g I 0.000
Cucsa.242590 Cucumis sativus Cucsa.242590 I 0.000
Eucgr.A02456 Eucalyptus grandis Eucgr.A02456 I 0.000
evm.TU.supercontig_85.54 Carica papaya evm.TU.supercontig_85.54 I 0.000
F775_01928 Aegilops tauschii F775_01928 I 0.000
fgenesh2_kg.4__2350__AT2G42040.1 Arabidopsis lyrata fgenesh2_kg.4__2350__AT2G42040.1 I 0.000
gene00456-v1.0-hybrid Fragaria vesca gene00456-v1.0-hybrid I 0.000
GLYMA02G28962 Glycine max GLYMA02G28962 I 0.000
GLYMA03G30170 Glycine max GLYMA03G30170 I 0.000
GLYMA09G16841 Glycine max GLYMA09G16841 I 0.000
GLYMA19G33070 Glycine max GLYMA19G33070 I 0.000
Gorai.002G156300 Gossypium raimondii Gorai.002G156300 I 0.000
Gorai.012G100300 Gossypium raimondii Gorai.012G100300 I 0.000
GRMZM2G033915 Zea mays GRMZM2G033915 I 0.000
GRMZM2G134552 Zea mays GRMZM2G134552 N 0.000
GRMZM2G165991 Zea mays GRMZM2G165991 I 0.000
GSMUA_Achr10G29530_001 Musa acuminata GSMUA_Achr10G29530_001 I 0.000
GSMUA_Achr3G07730_001 Musa acuminata GSMUA_Achr3G07730_001 I 0.000
GSMUA_Achr3G20210_001 Musa acuminata GSMUA_Achr3G20210_001 I 0.000
GSMUA_Achr7G18600_001 Musa acuminata GSMUA_Achr7G18600_001 I 0.000
GSMUA_Achr9G15730_001 Musa acuminata GSMUA_Achr9G15730_001 I 0.000
LjT35F01.80.nd Lotus japonicus LjT35F01.80.nd I 0.000
LPERR02G28190 Leersia perrieri LPERR02G28190 I 0.000
LPERR06G06210 Leersia perrieri LPERR06G06210 I 0.000
Lus10004164.g Linum usitatissimum Lus10004164.g I 0.000
Lus10021062.g Linum usitatissimum Lus10021062.g I 0.000
MDP0000121493 Malus domestica MDP0000121493 I 0.000
MDP0000154434 Malus domestica MDP0000154434 I 0.000
mgf007626m Mimulus guttatus mgf007626m I 0.000
MLOC_17575 Hordeum vulgare MLOC_17575 I 0.000
MTR_1g054175 Medicago truncatula MTR_1g054175 I 0.000
MTR_7g093350 Medicago truncatula MTR_7g093350 I 0.000
MTR_7g093360 Medicago truncatula MTR_7g093360 I 0.000
OB06G16230 Oryza brachyantha OB06G16230 I 0.000
OBART06G06800 Oryza barthii OBART06G06800 I 0.000
OGLUM02G35430 Oryza glumaepatula OGLUM02G35430 I 0.000
OGLUM06G07170 Oryza glumaepatula OGLUM06G07170 I 0.000
OMERI02G32570 Oryza meridionalis OMERI02G32570 I 0.000
OMERI06G07980 Oryza meridionalis OMERI06G07980 I 0.000
ONIVA02G36360 Oryza nivara ONIVA02G36360 I 0.000
ONIVA06G08110 Oryza nivara ONIVA06G08110 I 0.000
OPUNC02G31650 Oryza punctata OPUNC02G31650 I 0.000
OPUNC06G06450 Oryza punctata OPUNC06G06450 I 0.000
orange1.1g019760m.g Citrus sinensis orange1.1g019760m.g I 0.000
ORGLA02G0296600 Oryza glaberrima ORGLA02G0296600 I 0.000
ORGLA06G0063300 Oryza glaberrima ORGLA06G0063300 I 0.000
ORUFI02G35820 Oryza rufipogon ORUFI02G35820 I 0.000
ORUFI06G07050 Oryza rufipogon ORUFI06G07050 I 0.000
OS02G0773600 Oryza sativa OS02G0773600 I 0.000
OS06G0207600 Oryza sativa OS06G0207600 I 0.000
Pavir.Aa00328 Panicum virgatum Pavir.Aa00328 N 0.000
Pavir.J07916 Panicum virgatum Pavir.J07916 N 0.000
Pavir.J23833 Panicum virgatum Pavir.J23833 I 0.000
Pavir.J25248 Panicum virgatum Pavir.J25248 I 0.000
PDK_20s1436981g002 Phoenix dactylifera PDK_20s1436981g002 I 0.000
PGSC0003DMG400023669 Solanum tuberosum PGSC0003DMG400023669 I 0.000
PK26699.1 Cannabis sativa PK26699.1 I 0.000
Pm025936 Prunus mume Pm025936 I 0.000
POPTR_0006s20770 Populus trichocarpa POPTR_0006s20770 I 0.000
POPTR_0006s20790 Populus trichocarpa POPTR_0006s20790 I 0.000
POPTR_0016s05840 Populus trichocarpa POPTR_0016s05840 I 0.000
POPTR_0016s05850 Populus trichocarpa POPTR_0016s05850 I 0.000
PRUPE_ppa016277mg Prunus persica PRUPE_ppa016277mg I 0.000
SapurV1A.0251s0230 Salix purpurea SapurV1A.0251s0230 I 0.000
SapurV1A.0854s0090 Salix purpurea SapurV1A.0854s0090 I 0.000
SapurV1A.0854s0100 Salix purpurea SapurV1A.0854s0100 I 0.000
SapurV1A.3188s0010 Salix purpurea SapurV1A.3188s0010 I 0.000
Sb10g006810 Sorghum bicolor Sb10g006810 I 0.000
Si019733m.g Setaria italica Si019733m.g N 0.000
Solyc10g080530.1 Solanum lycopersicum Solyc10g080530.1 I 0.000
TCM_024932 Theobroma cacao TCM_024932 I 0.000
Thhalv10017052m.g Eutrema salsugineum Thhalv10017052m.g I 0.000
VIT_08s0007g06640 Vitis vinifera VIT_08s0007g06640 I 0.000
VIT_08s0007g06690 Vitis vinifera VIT_08s0007g06690 I 0.000