Myotis_brandtii_RX1_10024726 (Myotis brandtii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Myotis_brandtii_RX1_10024726 T226441_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Obox6
M00490_2.00
Mus musculus
NTAATCYNN

NNRGATTAN
PBM
Berger et al.(2008)
Obox6_3440
0.659 0.404
ceh-53
M00679_2.00
Caenorhabditis elegans
HTAATCYN

NRGATTAD
PBM
Narasimhan et al.(2015)
pTH10699
0.646 0.439
ceh-37
M00674_2.00
Caenorhabditis elegans
HTAATCYN

NRGATTAD
PBM
Narasimhan et al.(2015)
pTH10716
0.639 0.404
Dmbx1
M00441_2.00
Mus musculus
NTAATCYNN

NNRGATTAN
PBM
Berger et al.(2008)
Dmbx1_2277
0.638 0.404
DMBX1
M03236_2.00
Homo sapiens
NHTAATCCBN

NVGGATTADN
SELEX
Jolma et al.(2013)
DMBX1_1
0.638 0.404
DMBX1
M05383_2.00
Homo sapiens
NTAATCSN

NSGATTAN
SELEX
Yin et al.(2017)
DMBX1_eDBD_HT-SELEX
0.638 0.404
DMBX1
M05384_2.00
Homo sapiens
HTAATCCN

NGGATTAD
SELEX
Yin et al.(2017)
DMBX1_eDBD_Methyl-HT-SELEX
0.638 0.404
NEMVEDRAFT_v1g113057
M02144_2.00
Nematostella vectensis
NYTAATCCBN

NVGGATTARN
PBM
Weirauch et al.(2014)
pTH6135
0.636 0.351
CRX
M00274_2.00
Homo sapiens
NMTAATCCSN

NSGGATTAKN
PBM
Barrera et al.(2016)
CRX_REF
0.633 0.386
Otx1
M00396_2.00
Mus musculus
NTAAKCYN

NRGMTTAN
PBM
Berger et al.(2008)
Otx1_2325
0.633 0.386
Otx2
M00418_2.00
Mus musculus
NTAAKMBN

NVKMTTAN
PBM
Berger et al.(2008)
Otx2_3441
0.633 0.386
Crx
M00489_2.00
Mus musculus
NWAAKMBN

NVKMTTWN
PBM
Berger et al.(2008)
Crx_3485
0.633 0.386
OTX1
M03116_2.00
Homo sapiens
NNTAAKCGGATTANN

NNTAATCCGMTTANN
SELEX
Jolma et al.(2013)
OTX1_1
0.633 0.386
OTX1
M03117_2.00
Homo sapiens
NTAATCSB

VSGATTAN
SELEX
Jolma et al.(2013)
OTX1_2
0.633 0.386
OTX2
M03197_2.00
Homo sapiens
NHTAAKCGGATTANN

NNTAATCCGMTTADN
SELEX
Jolma et al.(2013)
OTX2_1
0.633 0.386
OTX2
M03198_2.00
Homo sapiens
HTAATCCB

VGGATTAD
SELEX
Jolma et al.(2013)
OTX2_2
0.633 0.386
Otx1
M03249_2.00
Mus musculus
NNTAAKCGGATTANN

NNTAATCCGMTTANN
SELEX
Jolma et al.(2013)
Otx1_1
0.633 0.386
Otx1
M03250_2.00
Mus musculus
NTAATCCN

NGGATTAN
SELEX
Jolma et al.(2013)
Otx1_2
0.633 0.386
oc
M03808_2.00
Drosophila melanogaster
HTAATCCB

VGGATTAD
SELEX
Nitta et al.(2015)
oc_1
0.633 0.386
CRX
M04949_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
CRX_FL_HT-SELEX
0.633 0.386
OTX1
M05022_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
OTX1_eDBD_HT-SELEX
0.633 0.386
OTX1
M05024_2.00
Homo sapiens
NTAATCCNNN

NNNGGATTAN
SELEX
Yin et al.(2017)
OTX1_FL_HT-SELEX
0.633 0.386
OTX2
M05251_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
OTX2_FL_HT-SELEX
0.633 0.386
oc
M06502_2.00
Drosophila melanogaster
TAATCC

GGATTA
B1H
Mathelier et al.(2014)
MA0234.1
0.633 0.386
oc
M06282_2.00
Drosophila melanogaster
WTAATCC

GGATTAW
B1H
Zhu et al.(2011)
Oc_Cell_FBgn0004102
0.633 0.386
oc
M06283_2.00
Drosophila melanogaster
NTAATCCB

VGGATTAN
B1H
Zhu et al.(2011)
Oc_SOLEXA_FBgn0004102
0.633 0.386
Crx
M08139_2.00
Mus musculus
YTAATCCYCYY

RRGRGGATTAR
ChIP-seq
Mathelier et al.(2014)
MA0467.1
0.633 0.386
CRX
M09132_2.00
Homo sapiens
BYTAATCCBHYYN

NRRDVGGATTARV
Misc
Kulakovskiy et al.(2013)
CRX_HUMAN.H11MO.0.B
0.633 0.386
OTX2
M09153_2.00
Homo sapiens
BYTAATCCYYN

NRRGGATTARV
Misc
Kulakovskiy et al.(2013)
OTX2_HUMAN.H11MO.0.A
0.633 0.386
Crx
M09208_2.00
Mus musculus
BYTAATCCBHYYN

NRRDVGGATTARV
Misc
Kulakovskiy et al.(2013)
CRX_MOUSE.H11MO.0.A
0.633 0.386
Otx2
M09183_2.00
Mus musculus
HTAATCCYNYNN

NNRNRGGATTAD
Misc
Kulakovskiy et al.(2013)
OTX2_MOUSE.H11MO.0.A
0.633 0.386
Crx
M09577_2.00
Mus musculus
NYTAATCC

GGATTARN
Misc
Heinz et al.(2010)
Retina-Crx_GSE20012
0.633 0.386
Otx2
M09569_2.00
Mus musculus
NHTAATCCHB

VDGGATTADN
Misc
Heinz et al.(2010)
EpiLC-Otx2_GSE56098
0.633 0.386
oc
M09681_2.00
Drosophila melanogaster
HTAATCCN

NGGATTAD
Misc
Kulakovskiy et al.(2009)
oc
0.633 0.386
CRX
M10647_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CRX_Q4_01
0.633 0.386
CRX
M10648_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CRX_Q4_02
0.633 0.386
OTX1
M10673_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OTX1_Q5
0.633 0.386
OTX2
M10727_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OTX2_Q3_01
0.633 0.386
OTX2
M10728_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OTX2_Q3
0.633 0.386
CRX
M00271_2.00
Homo sapiens
NHDAKNN

NNMTHDN
PBM
Barrera et al.(2016)
CRX_R41Q
0.633 0.386
CRX
M00272_2.00
Homo sapiens
NNHNATNN

NNATNDNN
PBM
Barrera et al.(2016)
CRX_R41W
0.633 0.386
CRX
M00273_2.00
Homo sapiens
NNYTAATCCVN

NBGGATTARNN
PBM
Barrera et al.(2016)
CRX_R90W
0.633 0.386
CRX
M00275_2.00
Homo sapiens
NMTAATCCSN

NSGGATTAKN
PBM
Barrera et al.(2016)
CRX_V66I
0.633 0.386
CRX
M04950_2.00
Homo sapiens
HTAATCCN

NGGATTAD
SELEX
Yin et al.(2017)
CRX_FL_Methyl-HT-SELEX
0.633 0.386
OTX1
M05023_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
OTX1_eDBD_Methyl-HT-SELEX
0.633 0.386
OTX1
M05025_2.00
Homo sapiens
HTAATCCNHN

NDNGGATTAD
SELEX
Yin et al.(2017)
OTX1_FL_Methyl-HT-SELEX
0.633 0.386
OTX2
M05252_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
OTX2_FL_Methyl-HT-SELEX
0.633 0.386
HBX4_ECHGR
M02195_2.00
Echinococcus granulosus
NHTAATCYNN

NNRGATTADN
PBM
Weirauch et al.(2014)
pTH6301
0.631 0.386
ceh-36
M00673_2.00
Caenorhabditis elegans
NWAATCYN

NRGATTWN
PBM
Narasimhan et al.(2015)
pTH10730
0.629 0.421
Gsc
M00411_2.00
Mus musculus
NNTAATYBN

NVRATTANN
PBM
Berger et al.(2008)
Gsc_2327
0.626 0.404
GSC
M03146_2.00
Homo sapiens
NHTAATCCNH

DNGGATTADN
SELEX
Jolma et al.(2013)
GSC_1
0.626 0.404
GSC
M05134_2.00
Homo sapiens
NTAATCCB

VGGATTAN
SELEX
Yin et al.(2017)
GSC_eDBD_HT-SELEX
0.626 0.404
GSC
M05136_2.00
Homo sapiens
HTAATCCN

NGGATTAD
SELEX
Yin et al.(2017)
GSC_FL_HT-SELEX
0.626 0.404
gsc
M09584_2.00
Xenopus tropicalis
NTAATCYN

NRGATTAN
Misc
Heinz et al.(2010)
FrogEmbryos-GSC_DRA000576
0.626 0.404
GSC
M05135_2.00
Homo sapiens
HTAATCCB

VGGATTAD
SELEX
Yin et al.(2017)
GSC_eDBD_Methyl-HT-SELEX
0.626 0.404
GSC
M05137_2.00
Homo sapiens
HTAATCCN

NGGATTAD
SELEX
Yin et al.(2017)
GSC_FL_Methyl-HT-SELEX
0.626 0.404
Obox3
M00523_2.00
Mus musculus
NWWATMN

NKATWWN
PBM
Berger et al.(2008)
Obox3_3439
0.613 0.386
Obox1
M00515_2.00
Mus musculus
NTAATCYNNN

NNNRGATTAN
PBM
Berger et al.(2008)
Obox1_3970
0.613 0.368
Obox5
M00527_2.00
Mus musculus
NTWATHNN

NNDATWAN
PBM
Berger et al.(2008)
Obox5_2284
0.613 0.368
Obox5
M00528_2.00
Mus musculus
NWDATHNN

NNDATHWN
PBM
Berger et al.(2008)
Obox5_3963
0.613 0.368
CRX
M00270_2.00
Homo sapiens
NWDAKNN

NNMTHWN
PBM
Barrera et al.(2016)
CRX_E80A
0.612 0.368
Gsc
M02120_2.00
Drosophila melanogaster
NTAATCYN

NRGATTAN
PBM
Weirauch et al.(2014)
pTH5511
0.609 0.421
Gsc
M03817_2.00
Drosophila melanogaster
TAATCCB

VGGATTA
SELEX
Nitta et al.(2015)
Gsc_1
0.609 0.421
Gsc
M03818_2.00
Drosophila melanogaster
TAATCGGATTA

TAATCCGATTA
SELEX
Nitta et al.(2015)
Gsc_2
0.609 0.421
Gsc
M03819_2.00
Drosophila melanogaster
TAATCYNHTAATCBN

NVGATTADNRGATTA
SELEX
Nitta et al.(2015)
Gsc_3
0.609 0.421
Gsc
M03820_2.00
Drosophila melanogaster
TAATCGGATTA

TAATCCGATTA
SELEX
Nitta et al.(2015)
Gsc_4
0.609 0.421
Gsc
M03821_2.00
Drosophila melanogaster
TAATCYNWTWATCYB

VRGATWAWNRGATTA
SELEX
Nitta et al.(2015)
Gsc_5
0.609 0.421
Gsc
M05873_2.00
Drosophila melanogaster
TAATCSNHTWA

TWADNSGATTA
SMiLE-seq
Isakova et al.(2017)
Gsc
0.609 0.421
Gsc
M06509_2.00
Drosophila melanogaster
TAATCY

RGATTA
B1H
Mathelier et al.(2014)
MA0190.1
0.609 0.421
Gsc
M06297_2.00
Drosophila melanogaster
VNTAATCY

RGATTANB
B1H
Zhu et al.(2011)
Gsc_Cell_FBgn0010323
0.609 0.421
Gsc
M06298_2.00
Drosophila melanogaster
NTAATCY

RGATTAN
B1H
Zhu et al.(2011)
Gsc_SOLEXA_FBgn0010323
0.609 0.421
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Myotis_brandtii_RX1_10024726 Homeodomain 21 77

Links

Other Homeodomain family TFs
Other Myotis brandtii TFs

Invalid Input OrderBy

757 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action