CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ogr00063
(
Ophisaurus gracilis
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Ogr00063
T226462_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CDX2
M03196_2.00
Homo sapiens
KTTTATKRB
VYMATAAAM
SELEX
Jolma et al.(2013)
CDX2_1
0.326
1.000
CDX2
M05248_2.00
Homo sapiens
NDTWAYRRYN
NRYYRTWAHN
SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_1
0.326
1.000
CDX2
M05249_2.00
Homo sapiens
NDWWATKRB
VYMATWWHN
SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_2
0.326
1.000
CDX2
M08131_2.00
Homo sapiens
YTTTATKRCHB
VDGYMATAAAR
ChIP-seq
Mathelier et al.(2014)
MA0465.1
0.326
1.000
CDX2
M09152_2.00
Homo sapiens
DTTBATKGCHNB
VNDGCMATVAAH
Misc
Kulakovskiy et al.(2013)
CDX2_HUMAN.H11MO.0.A
0.326
1.000
CDX2
M10723_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q5_01
0.326
1.000
CDX2
M10724_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q5_02
0.326
1.000
CDX2
M10725_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q5
0.326
1.000
CDX2
M10726_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q6
0.326
1.000
CDX2
M05250_2.00
Homo sapiens
NRTCGTAWHBNN
NNVDWTACGAYN
SELEX
Yin et al.(2017)
CDX2_eDBD_Methyl-HT-SELEX
0.326
1.000
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ogr00063
Homeodomain
41
83
DKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQ
Links
Other
Homeodomain
family TFs
Other
Ophisaurus gracilis
TFs
113 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy