CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ogr14607
(
Ophisaurus gracilis
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Ogr14607
T226579_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Hoxd12_CONSTRUCT
M00538_2.00
PBM CONSTRUCTS
NWTWAYNDBN
NVHNRTWAWN
PBM
Berger et al.(2008)
Hoxd12_3481
0.848
0.912
HOXD12
M03206_2.00
Homo sapiens
SYAATAAAA
TTTTATTRS
SELEX
Jolma et al.(2013)
HOXD12_1
0.848
0.912
HOXD12
M03207_2.00
Homo sapiens
RVTCGTAAAAH
DTTTTACGABY
SELEX
Jolma et al.(2013)
HOXD12_2
0.848
0.912
HOXD12
M03208_2.00
Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN
SELEX
Jolma et al.(2013)
HOXD12_3
0.848
0.912
HOXD12
M03209_2.00
Homo sapiens
DTTWATYRC
GYRATWAAH
SELEX
Jolma et al.(2013)
HOXD12_4
0.848
0.912
HOXD12
M05279_2.00
Homo sapiens
NKTWACGAYN
NRTCGTWAMN
SELEX
Yin et al.(2017)
HOXD12_eDBD_HT-SELEX
0.848
0.912
HOXD12
M05280_2.00
Homo sapiens
NRTCGTAAAH
DTTTACGAYN
SELEX
Yin et al.(2017)
HOXD12_eDBD_Methyl-HT-SELEX
0.848
0.912
HXD12_HETFR
M02196_2.00
Heterodontus francisci
TTWATKRC
GYMATWAA
PBM
Weirauch et al.(2014)
pTH6533
0.815
0.877
Hoxc12
M00508_2.00
Mus musculus
NDTWAYNDBN
NVHNRTWAHN
PBM
Berger et al.(2008)
Hoxc12_3480
0.803
0.807
HOXC12
M03135_2.00
Homo sapiens
TTTTATTRY
RYAATAAAA
SELEX
Jolma et al.(2013)
HOXC12_1
0.803
0.807
HOXC12
M03136_2.00
Homo sapiens
RRTCGTAAAAH
DTTTTACGAYY
SELEX
Jolma et al.(2013)
HOXC12_2
0.803
0.807
HOXC12
M05083_2.00
Homo sapiens
NGYAATAAAAN
NTTTTATTRCN
SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_1
0.803
0.807
HOXC12
M05084_2.00
Homo sapiens
VRTCGTAAAHN
NDTTTACGAYB
SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_2
0.803
0.807
HOXC12
M05085_2.00
Homo sapiens
NGYAATAAAAH
DTTTTATTRCN
SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_1
0.803
0.807
HOXC12
M05086_2.00
Homo sapiens
NRTCGTAAAHH
DDTTTACGAYN
SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_2
0.803
0.807
Abd-B
M00554_2.00
Drosophila melanogaster
NWTWAYDDNN
NNHHRTWAWN
PBM
Busser et al.(2012a)
Abd-B
0.706
0.596
Abd-B
M03772_2.00
Drosophila melanogaster
DRTCRTAAAWH
DWTTTAYGAYH
SELEX
Nitta et al.(2015)
Abd-B_1
0.706
0.596
Abd-B
M03773_2.00
Drosophila melanogaster
DTTTTATKRCY
RGYMATAAAAH
SELEX
Nitta et al.(2015)
Abd-B_2
0.706
0.596
Abd-B
M03774_2.00
Drosophila melanogaster
NKCARYAACGACYW
WRGTCGTTRYTGMN
SELEX
Nitta et al.(2015)
Abd-B_3
0.706
0.596
Abd-B
M03775_2.00
Drosophila melanogaster
DTTTWATGKSTTTY
RAAASMCATWAAAH
SELEX
Nitta et al.(2015)
Abd-B_4
0.706
0.596
Abd-B
M06476_2.00
Drosophila melanogaster
TTTATKR
YMATAAA
B1H
Mathelier et al.(2014)
MA0165.1
0.706
0.596
Abd-B
M06211_2.00
Drosophila melanogaster
YCATAAAA
TTTTATGR
B1H
Zhu et al.(2011)
Abd-B_FlyReg_FBgn0000015
0.706
0.596
Abd-B
M09672_2.00
Drosophila melanogaster
YMATAAAAHH
DDTTTTATKR
Misc
Kulakovskiy et al.(2009)
Abd-B
0.706
0.596
Abd-B
M10779_2.00
Drosophila melanogaster
VSNTTDATKRCNNN
NNNGYMATHAANSB
Transfac
Matys et al.(2006)
I$ABDB_01
0.706
0.596
Abd-B
M10780_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$ABDB_Q6
0.706
0.596
Hoxa11
M00474_2.00
Mus musculus
NNHNHNNNN
NNNNDNDNN
PBM
Berger et al.(2008)
Hoxa11_2218
0.636
0.649
Hoxa11
M03274_2.00
Mus musculus
NNDTTWAYGABN
NVTCRTWAAHNN
SELEX
Jolma et al.(2013)
Hoxa11_1
0.636
0.649
Hoxa11
M03275_2.00
Mus musculus
NDTTWATKRNN
NNYMATWAAHN
SELEX
Jolma et al.(2013)
Hoxa11_2
0.636
0.649
HOXA11
M04897_2.00
Homo sapiens
VGTCGTAAAWH
DWTTTACGACB
SELEX
Yin et al.(2017)
HOXA11_eDBD_HT-SELEX_1
0.636
0.649
HOXA11
M04898_2.00
Homo sapiens
DDTTWATKRSN
NSYMATWAAHH
SELEX
Yin et al.(2017)
HOXA11_eDBD_HT-SELEX_2
0.636
0.649
HOXA11
M04899_2.00
Homo sapiens
NRTCGTAAAWH
DWTTTACGAYN
SELEX
Yin et al.(2017)
HOXA11_eDBD_Methyl-HT-SELEX_1
0.636
0.649
HOXA11
M04900_2.00
Homo sapiens
DYTTTATKRCH
DGYMATAAARH
SELEX
Yin et al.(2017)
HOXA11_eDBD_Methyl-HT-SELEX_2
0.636
0.649
Hoxc11
M00390_2.00
Mus musculus
NTTWAYDDBN
NVHHRTWAAN
PBM
Berger et al.(2008)
Hoxc11_3718
0.636
0.632
Hoxd11
M00493_2.00
Mus musculus
DDDNNNNN
NNNNNHHH
PBM
Berger et al.(2008)
Hoxd11_3873
0.636
0.632
HOXC11
M03131_2.00
Homo sapiens
NWTTWAYGAYH
DRTCRTWAAWN
SELEX
Jolma et al.(2013)
HOXC11_1
0.636
0.632
HOXC11
M03132_2.00
Homo sapiens
NWTTWATKRBH
DVYMATWAAWN
SELEX
Jolma et al.(2013)
HOXC11_2
0.636
0.632
HOXC11
M03133_2.00
Homo sapiens
DRTCGTWAAWN
NWTTWACGAYH
SELEX
Jolma et al.(2013)
HOXC11_3
0.636
0.632
HOXC11
M03134_2.00
Homo sapiens
NTTTTATKRBN
NVYMATAAAAN
SELEX
Jolma et al.(2013)
HOXC11_4
0.636
0.632
HOXD11
M03139_2.00
Homo sapiens
RTCGTAAAWH
DWTTTACGAY
SELEX
Jolma et al.(2013)
HOXD11_1
0.636
0.632
HOXD11
M03140_2.00
Homo sapiens
TTTWATKRBH
DVYMATWAAA
SELEX
Jolma et al.(2013)
HOXD11_2
0.636
0.632
HOXD11
M05120_2.00
Homo sapiens
NRTCGTWAANNDTWAH
DTWAHNNTTWACGAYN
SELEX
Yin et al.(2017)
HOXD11_eDBD_HT-SELEX
0.636
0.632
HOXC11
M05075_2.00
Homo sapiens
NDTTWACGAYN
NRTCGTWAAHN
SELEX
Yin et al.(2017)
HOXC11_eDBD_HT-SELEX_1
0.636
0.632
HOXC11
M05076_2.00
Homo sapiens
NWTTWATKRCH
DGYMATWAAWN
SELEX
Yin et al.(2017)
HOXC11_eDBD_HT-SELEX_2
0.636
0.632
HOXC11
M05079_2.00
Homo sapiens
NRTCGTWAAHN
NDTTWACGAYN
SELEX
Yin et al.(2017)
HOXC11_FL_HT-SELEX_1
0.636
0.632
HOXC11
M05080_2.00
Homo sapiens
NDTTWATKRSN
NSYMATWAAHN
SELEX
Yin et al.(2017)
HOXC11_FL_HT-SELEX_2
0.636
0.632
HOXD11
M05121_2.00
Homo sapiens
NRTCGTWAAHNDTWAH
DTWAHNDTTWACGAYN
SELEX
Yin et al.(2017)
HOXD11_eDBD_Methyl-HT-SELEX
0.636
0.632
HOXC11
M05077_2.00
Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN
SELEX
Yin et al.(2017)
HOXC11_eDBD_Methyl-HT-SELEX_1
0.636
0.632
HOXC11
M05078_2.00
Homo sapiens
NDTTTATKRSN
NSYMATAAAHN
SELEX
Yin et al.(2017)
HOXC11_eDBD_Methyl-HT-SELEX_2
0.636
0.632
HOXC11
M05081_2.00
Homo sapiens
NRTCGTWAANN
NNTTWACGAYN
SELEX
Yin et al.(2017)
HOXC11_FL_Methyl-HT-SELEX_1
0.636
0.632
HOXC11
M05082_2.00
Homo sapiens
NNTTWAYKRSN
NSYMRTWAANN
SELEX
Yin et al.(2017)
HOXC11_FL_Methyl-HT-SELEX_2
0.636
0.632
Q9U9Y9_LINUN
M02218_2.00
Lingula unguis
NNTAATWAATN
NATTWATTANN
PBM
Weirauch et al.(2014)
pTH5504
0.619
0.544
hox12
M02075_2.00
Ciona intestinalis
TTWAYKAY
RTMRTWAA
PBM
Weirauch et al.(2014)
pTH6299
0.607
0.579
MEOX2
M03103_2.00
Homo sapiens
NNTRATKASN
NSTMATYANN
SELEX
Jolma et al.(2013)
MEOX2_1
0.600
0.491
MEOX2
M03104_2.00
Homo sapiens
NTAATTANVNTAATTAV
BTAATTANBNTAATTAN
SELEX
Jolma et al.(2013)
MEOX2_2
0.600
0.491
MEOX2
M03105_2.00
Homo sapiens
HTAATGATGATKAN
NTMATCATCATTAD
SELEX
Jolma et al.(2013)
MEOX2_3
0.600
0.491
Meox2
M03271_2.00
Mus musculus
NTAATKAN
NTMATTAN
SELEX
Jolma et al.(2013)
Meox2_1
0.600
0.491
MEOX2
M04988_2.00
Homo sapiens
NTDAYGHB
VDCRTHAN
SELEX
Yin et al.(2017)
MEOX2_FL_HT-SELEX_1
0.600
0.491
MEOX2
M04989_2.00
Homo sapiens
NTVATBRV
BYVATBAN
SELEX
Yin et al.(2017)
MEOX2_FL_HT-SELEX_2
0.600
0.491
Meox2
M10771_2.00
Rattus norvegicus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEOX2_05
0.600
0.491
MEOX2
M04990_2.00
Homo sapiens
NTAAYGHB
VDCRTTAN
SELEX
Yin et al.(2017)
MEOX2_FL_Methyl-HT-SELEX_1
0.600
0.491
MEOX2
M04991_2.00
Homo sapiens
NTVATKRN
NYMATBAN
SELEX
Yin et al.(2017)
MEOX2_FL_Methyl-HT-SELEX_2
0.600
0.491
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ogr14607
Homeodomain
63
119
RKKRKPYAKQQIAELESEFLLSEFINRQKRKELSNRLNLSDQQVKIWLQNRRMKKKR
Links
Other
Homeodomain
family TFs
Other
Ophisaurus gracilis
TFs
541 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy