Pm008905 (Prunus mume)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pm008905 T226647_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MTR_2g038000
M02141_2.00 		Medicago truncatula
NDNYWNNNNN
NNNNNWRNHN		 PBM
Weirauch et al.(2014)
pTH6339 		0.680 0.684
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm008905 Homeodomain 466 522

Links

Other Homeodomain family TFs
Other Prunus mume TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa023964mg Prunus persica PRUPE_ppa023964mg I 0.867
gene17249-v1.0-hybrid Fragaria vesca gene17249-v1.0-hybrid I 0.837
GLYMA09G06730 Glycine max GLYMA09G06730 I 0.831
GLYMA15G17956 Glycine max GLYMA15G17956 I 0.800
GLYMA13G00540 Glycine max GLYMA13G00540 I 0.798
GLYMA17G06690 Glycine max GLYMA17G06690 I 0.794
cassava27173.m1 Manihot esculenta cassava27173.m1 I 0.769
POPTR_0006s07520 Populus trichocarpa POPTR_0006s07520 N 0.758
POPTR_0018s13920 Populus trichocarpa POPTR_0018s13920 N 0.758
29671.m000294 Ricinus communis 29671.m000294 I 0.737
Gorai.009G002500 Gossypium raimondii Gorai.009G002500 I 0.728
Ca_08838 Cicer arietinum Ca_08838 I 0.725
Eucgr.C00114 Eucalyptus grandis Eucgr.C00114 I 0.705
chr4.CM0244.10.nd Lotus japonicus chr4.CM0244.10.nd I 0.684
MTR_2g038000 Medicago truncatula MTR_2g038000 D 0.680
Thhalv10024489m.g Eutrema salsugineum Thhalv10024489m.g I 0.675
Bostr.7867s0841 Boechera stricta Bostr.7867s0841 I 0.675
mgf003961m Mimulus guttatus mgf003961m I 0.673
Bra010310 Brassica rapa Bra010310 I 0.664
Bo3g175850 Brassica oleracea Bo3g175850 I 0.664
SapurV1A.0140s0170 Salix purpurea SapurV1A.0140s0170 N 0.660
Carubv10004175m.g Capsella rubella Carubv10004175m.g I 0.660
Cagra.0268s0009 Capsella grandiflora Cagra.0268s0009 I 0.660
Bra011153 Brassica rapa Bra011153 I 0.643
Bo1g014710 Brassica oleracea Bo1g014710 I 0.643
PRH Arabidopsis thaliana AT4G29940 I 0.629
PRHA Arabidopsis lyrata scaffold_701235.1 I 0.627
Cucsa.081360 Cucumis sativus Cucsa.081360 N 0.605
Cla019142 Citrullus lanatus Cla019142 N 0.605