Pm011328 (Prunus mume)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pm011328 T226653_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.727 0.667
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.727 0.667
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD

HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.727 0.649
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD

HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.727 0.649
ATHB-51
M00867_2.00
Arabidopsis thaliana
ATWATKNN

NNMATWAT
PBM
Franco-Zorrilla et al.(2014)
ATHB51
0.626 0.509
ATHB-51
M06927_2.00
Arabidopsis thaliana
DNCAATAATTGAD

HTCAATTATTGNH
Dap-seq
OMalley et al.(2016)
LMI1_col_a
0.626 0.509
ATHB-51
M06928_2.00
Arabidopsis thaliana
NDNCAATAATTGA

TCAATTATTGNHN
Dap-seq
OMalley et al.(2016)
LMI1_colamp_a
0.626 0.509
ATHB-22
M02041_2.00
Arabidopsis thaliana
NNATAATWWWNNN

NNNWWWATTATNN
PBM
Weirauch et al.(2014)
pTH5883
0.623 0.509
ATHB-12
M00865_2.00
Arabidopsis thaliana
NNNNNNNN

NNNNNNNN
PBM
Franco-Zorrilla et al.(2014)
ATHB12
0.604 0.561
ATHB-12
M02045_2.00
Arabidopsis thaliana
BHWWWWWWDV

BHWWWWWWDV
PBM
Weirauch et al.(2014)
pTH7207
0.604 0.561
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm011328 Homeodomain 14 70

Links

Other Homeodomain family TFs
Other Prunus mume TFs

182 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.867
MDP0000146339 Malus domestica MDP0000146339 I 0.858
MDP0000909160 Malus domestica MDP0000909160 I 0.823
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.812
TCM_031644 Theobroma cacao TCM_031644 I 0.804
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.799
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.782
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.771
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.771
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.768
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.768
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.768
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.763
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.763
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.740
mgf013301m Mimulus guttatus mgf013301m I 0.740
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.729
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.728
Cla010510 Citrullus lanatus Cla010510 I 0.727
Pm015861 Prunus mume Pm015861 I 0.727
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.727
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.727
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.727
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.727
MDP0000737128 Malus domestica MDP0000737128 I 0.727
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.727
TCM_018470 Theobroma cacao TCM_018470 I 0.727
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.727
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.727
MDP0000124827 Malus domestica MDP0000124827 I 0.727
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.727
Ca_10527 Cicer arietinum Ca_10527 I 0.727
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.727
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.727
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.727
29822.m003500 Ricinus communis 29822.m003500 I 0.727
Bo2g012410 Brassica oleracea Bo2g012410 I 0.727
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.727
Bo1g158730 Brassica oleracea Bo1g158730 I 0.727
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.727
Bo3g010120 Brassica oleracea Bo3g010120 I 0.727
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.727
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.727
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.727
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.727
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.727
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.727
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.727
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.727
HAT7 Arabidopsis thaliana AT5G15150 I 0.727
PK20392.1 Cannabis sativa PK20392.1 D 0.727
Bo9g165360 Brassica oleracea Bo9g165360 I 0.727
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.727
Bra039135 Brassica rapa Bra039135 I 0.727
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.727
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.727
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.727
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.727
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.727
Bra023506 Brassica rapa Bra023506 I 0.727
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.727
Bra006285 Brassica rapa Bra006285 I 0.727
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.727
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.727
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.727
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.727
Bra008717 Brassica rapa Bra008717 I 0.727
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.722
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.720
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.720
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.719
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.715
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.715
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.713
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.707
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.705
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.700
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.697
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.693
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.693
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.693
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.693
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.693
Bo12274s010 Brassica oleracea Bo12274s010 I 0.691
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.691
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.689
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.688
Bra022687 Brassica rapa Bra022687 I 0.686
GLYMA12G18720 Glycine max GLYMA12G18720 I 0.686
Bo2g042250 Brassica oleracea Bo2g042250 I 0.686
mgf025174m Mimulus guttatus mgf025174m I 0.685
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.683
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.681
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.673
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.673
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.673
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.673
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.673
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.673
Si030983m.g Setaria italica Si030983m.g I 0.673
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.672
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.671
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.671
Pm018314 Prunus mume Pm018314 I 0.671
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.669
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.669
MDP0000119544 Malus domestica MDP0000119544 I 0.667
MDP0000134241 Malus domestica MDP0000134241 I 0.667
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.667
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.667
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.667
PK15535.1 Cannabis sativa PK15535.1 I 0.667
MDP0000738604 Malus domestica MDP0000738604 I 0.667
Pm026270 Prunus mume Pm026270 I 0.667
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.667
TCM_022391 Theobroma cacao TCM_022391 I 0.667
29815.m000499 Ricinus communis 29815.m000499 I 0.667
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.667
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.667
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.667
Cla018641 Citrullus lanatus Cla018641 I 0.661
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.661
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.657
29983.m003123 Ricinus communis 29983.m003123 I 0.656
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.656
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.656
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.655
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.654
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.654
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.654
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.646
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.643
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.640
MDP0000311522 Malus domestica MDP0000311522 I 0.638
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.637
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.637
mgf022748m Mimulus guttatus mgf022748m I 0.637
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.637
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.635
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.635
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.635
mgf019824m Mimulus guttatus mgf019824m I 0.635
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.635
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.635
Cla018017 Citrullus lanatus Cla018017 I 0.635
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.635
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.635
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.633
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.633
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.631
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.629
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.626
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.626
Bra028820 Brassica rapa Bra028820 I 0.626
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.626
Bo9g181720 Brassica oleracea Bo9g181720 I 0.626
Bra009510 Brassica rapa Bra009510 I 0.626
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.626
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.626
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.626
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.626
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.626
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.626
Bo2g005230 Brassica oleracea Bo2g005230 I 0.626
Bo3g002560 Brassica oleracea Bo3g002560 I 0.626
Bra005259 Brassica rapa Bra005259 I 0.623
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.623
Bo4g034490 Brassica oleracea Bo4g034490 I 0.623
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.623
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.616
Bra018155 Brassica rapa Bra018155 I 0.615
Ca_20151 Cicer arietinum Ca_20151 I 0.613
cassava46810.m1 Manihot esculenta cassava46810.m1 I 0.606
Ca_25882 Cicer arietinum Ca_25882 I 0.604
ATHB-12 Arabidopsis thaliana AT3G61890 D 0.604
Bostr.13158s0194 Boechera stricta Bostr.13158s0194 I 0.604
MTR_5g038280 Medicago truncatula MTR_5g038280 I 0.604
Cagra.0483s0055 Capsella grandiflora Cagra.0483s0055 I 0.604
Bo8g097390 Brassica oleracea Bo8g097390 I 0.604
ATHB-12 Arabidopsis lyrata fgenesh2_kg.5__2686__AT3G61890.1 I 0.604
Bra007637 Brassica rapa Bra007637 I 0.604
Carubv10017952m.g Capsella rubella Carubv10017952m.g I 0.604