Pm018314 (Prunus mume)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pm018314 T226666_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-12
M00865_2.00 		Arabidopsis thaliana
NNNNNNNN
NNNNNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATHB12 		0.712 0.807
ATHB-12
M02045_2.00 		Arabidopsis thaliana
BHWWWWWWDV
BHWWWWWWDV		 PBM
Weirauch et al.(2014)
pTH7207 		0.712 0.807
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.684 0.649
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.684 0.649
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.666 0.526
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.666 0.526
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.666 0.526
Q39944_HELAN
M10802_2.00 		Helianthus annuus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HAHB4_01 		0.666 0.649
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.664 0.596
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.664 0.596
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.663 0.526
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm018314 Homeodomain 37 93

Links

Other Homeodomain family TFs
Other Prunus mume TFs

255 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.867
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.813
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.813
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.813
Si030983m.g Setaria italica Si030983m.g I 0.813
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.813
MDP0000311522 Malus domestica MDP0000311522 I 0.802
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.802
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.781
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.772
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.759
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.751
MDP0000316497 Malus domestica MDP0000316497 I 0.749
Ca_17608 Cicer arietinum Ca_17608 I 0.740
MTR_8g026960 Medicago truncatula MTR_8g026960 I 0.740
Thhalv10006221m.g Eutrema salsugineum Thhalv10006221m.g I 0.739
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.720
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.716
Bra007637 Brassica rapa Bra007637 I 0.712
Carubv10017952m.g Capsella rubella Carubv10017952m.g I 0.712
Cagra.0483s0055 Capsella grandiflora Cagra.0483s0055 I 0.712
ATHB-12 Arabidopsis thaliana AT3G61890 D 0.712
Bostr.13158s0194 Boechera stricta Bostr.13158s0194 I 0.712
Bo8g097390 Brassica oleracea Bo8g097390 I 0.712
ATHB-12 Arabidopsis lyrata fgenesh2_kg.5__2686__AT3G61890.1 I 0.712
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.709
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.709
Bo4g100070 Brassica oleracea Bo4g100070 I 0.708
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.705
Lus10032952.g Linum usitatissimum Lus10032952.g I 0.703
Lus10008840.g Linum usitatissimum Lus10008840.g I 0.703
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.700
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.700
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.700
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.699
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.699
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.699
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.695
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.695
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.695
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.694
Bra014417 Brassica rapa Bra014417 I 0.693
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.692
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.692
TCM_015645 Theobroma cacao TCM_015645 I 0.692
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.691
TCM_005074 Theobroma cacao TCM_005074 I 0.690
27964.m000347 Ricinus communis 27964.m000347 I 0.690
POPTR_0002s17680 Populus trichocarpa POPTR_0002s17680 I 0.690
evm.TU.supercontig_144.7 Carica papaya evm.TU.supercontig_144.7 I 0.690
SapurV1A.0003s0740 Salix purpurea SapurV1A.0003s0740 I 0.690
SapurV1A.0162s0050 Salix purpurea SapurV1A.0162s0050 I 0.690
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.689
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.689
evm.TU.supercontig_3.138 Carica papaya evm.TU.supercontig_3.138 I 0.687
orange1.1g025886m.g Citrus sinensis orange1.1g025886m.g I 0.687
Ciclev10021877m.g Citrus clementina Ciclev10021877m.g I 0.687
Bra006285 Brassica rapa Bra006285 I 0.686
HAT7 Arabidopsis thaliana AT5G15150 I 0.686
Bra023506 Brassica rapa Bra023506 I 0.686
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.686
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.686
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.686
Bo3g010120 Brassica oleracea Bo3g010120 I 0.686
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.686
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.686
Gorai.007G111400 Gossypium raimondii Gorai.007G111400 I 0.686
Bo2g012410 Brassica oleracea Bo2g012410 I 0.686
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.686
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.686
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.685
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.684
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.684
Cla010510 Citrullus lanatus Cla010510 I 0.684
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.684
MDP0000737128 Malus domestica MDP0000737128 I 0.684
Bra008717 Brassica rapa Bra008717 I 0.684
TCM_018470 Theobroma cacao TCM_018470 I 0.684
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.684
Ca_10527 Cicer arietinum Ca_10527 I 0.684
Bo9g165360 Brassica oleracea Bo9g165360 I 0.684
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.684
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.684
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.684
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.684
MDP0000124827 Malus domestica MDP0000124827 I 0.684
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.684
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.684
Pm015861 Prunus mume Pm015861 I 0.684
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.684
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.684
29822.m003500 Ricinus communis 29822.m003500 I 0.684
PK20392.1 Cannabis sativa PK20392.1 D 0.684
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.684
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.684
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.684
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.684
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.684
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.684
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.683
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.683
POPTR_0014s09860 Populus trichocarpa POPTR_0014s09860 I 0.682
VIT_15s0048g02870 Vitis vinifera VIT_15s0048g02870 I 0.681
Ciclev10022365m.g Citrus clementina Ciclev10022365m.g I 0.681
orange1.1g029280m.g Citrus sinensis orange1.1g029280m.g I 0.681
mgf022748m Mimulus guttatus mgf022748m I 0.677
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.677
MDP0000134241 Malus domestica MDP0000134241 I 0.677
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.677
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.677
Cla018017 Citrullus lanatus Cla018017 I 0.676
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.676
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.676
Pm026270 Prunus mume Pm026270 I 0.676
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.676
Cla018641 Citrullus lanatus Cla018641 I 0.676
29815.m000499 Ricinus communis 29815.m000499 I 0.676
MDP0000738604 Malus domestica MDP0000738604 I 0.676
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.676
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.676
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.676
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.676
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.676
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.676
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.676
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.676
MDP0000119544 Malus domestica MDP0000119544 I 0.676
mgf019824m Mimulus guttatus mgf019824m I 0.676
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.676
TCM_022391 Theobroma cacao TCM_022391 I 0.676
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.676
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.676
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.676
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.676
cassava39514.m1 Manihot esculenta cassava39514.m1 I 0.675
Pm011328 Prunus mume Pm011328 I 0.671
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.671
MDP0000146339 Malus domestica MDP0000146339 I 0.670
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.669
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.669
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.669
TCM_031644 Theobroma cacao TCM_031644 I 0.669
Gorai.004G123500 Gossypium raimondii Gorai.004G123500 I 0.667
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.666
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.666
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.666
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.666
Bo3g002560 Brassica oleracea Bo3g002560 I 0.666
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.666
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.666
Q39944_HELAN Helianthus annuus Q39944_HELAN D 0.666
Bo9g181720 Brassica oleracea Bo9g181720 I 0.666
Bra009510 Brassica rapa Bra009510 I 0.666
Gorai.004G123100 Gossypium raimondii Gorai.004G123100 I 0.665
Bo1g158730 Brassica oleracea Bo1g158730 I 0.664
Bra039135 Brassica rapa Bra039135 I 0.664
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.664
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.664
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.664
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.664
PK15535.1 Cannabis sativa PK15535.1 I 0.664
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.664
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.664
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.664
cassava29431.valid.m1 Manihot esculenta cassava29431.valid.m1 I 0.663
cassava29430.valid.m1 Manihot esculenta cassava29430.valid.m1 I 0.663
Bo4g034490 Brassica oleracea Bo4g034490 I 0.663
TCM_015486 Theobroma cacao TCM_015486 I 0.663
Bra005259 Brassica rapa Bra005259 I 0.663
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.663
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.662
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.662
Aquca_013_00021 Aquilegia coerulea Aquca_013_00021 I 0.662
MDP0000909160 Malus domestica MDP0000909160 I 0.661
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.660
mgf013301m Mimulus guttatus mgf013301m I 0.660
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.660
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.655
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.655
PK15571.1 Cannabis sativa PK15571.1 I 0.654
Bra028820 Brassica rapa Bra028820 I 0.654
Bo2g005230 Brassica oleracea Bo2g005230 I 0.654
cassava29803.valid.m1 Manihot esculenta cassava29803.valid.m1 I 0.653
Gorai.001G152200 Gossypium raimondii Gorai.001G152200 I 0.653
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.651
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.651
Lus10030214.g Linum usitatissimum Lus10030214.g I 0.650
Bo12274s010 Brassica oleracea Bo12274s010 I 0.650
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.648
MTR_7g103340 Medicago truncatula MTR_7g103340 I 0.645
GLYMA03G34710 Glycine max GLYMA03G34710 I 0.645
GLYMA19G37380 Glycine max GLYMA19G37380 I 0.645
Ca_00750 Cicer arietinum Ca_00750 I 0.645
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.643
OB04G27300 Oryza brachyantha OB04G27300 I 0.640
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.639
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.639
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.639
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.639
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.639
Bra022687 Brassica rapa Bra022687 I 0.639
Bo2g042250 Brassica oleracea Bo2g042250 I 0.639
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.639
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.638
Cla002451 Citrullus lanatus Cla002451 I 0.637
BGIOSGA016852 Oryza indica BGIOSGA016852 I 0.636
F775_29232 Aegilops tauschii F775_29232 I 0.636
BRADI5G17170 Brachypodium distachyon BRADI5G17170 I 0.636
Pavir.Ga00670 Panicum virgatum Pavir.Ga00670 I 0.636
GLYMA04G40960 Glycine max GLYMA04G40960 I 0.636
MTR_3g092150 Medicago truncatula MTR_3g092150 I 0.636
OGLUM04G20240 Oryza glumaepatula OGLUM04G20240 I 0.636
GLYMA06G13890 Glycine max GLYMA06G13890 I 0.636
OBART04G20320 Oryza barthii OBART04G20320 I 0.636
ONIVA04G18550 Oryza nivara ONIVA04G18550 I 0.636
OPUNC04G17950 Oryza punctata OPUNC04G17950 I 0.636
Si010550m.g Setaria italica Si010550m.g I 0.636
ORUFI04G21910 Oryza rufipogon ORUFI04G21910 I 0.636
ORGLA04G0173700 Oryza glaberrima ORGLA04G0173700 I 0.636
Sb06g024000 Sorghum bicolor Sb06g024000 I 0.636
Traes_2BL_B69300543 Triticum aestivum Traes_2BL_B69300543 I 0.636
GRMZM2G351330 Zea mays GRMZM2G351330 I 0.636
Ca_04027 Cicer arietinum Ca_04027 I 0.636
GRMZM2G396527 Zea mays GRMZM2G396527 I 0.636
LPERR04G16440 Leersia perrieri LPERR04G16440 I 0.636
MLOC_70350 Hordeum vulgare MLOC_70350 I 0.636
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.631
Gorai.008G128000 Gossypium raimondii Gorai.008G128000 I 0.631
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.629
mgf025174m Mimulus guttatus mgf025174m I 0.627
PDK_20s1318331g001 Phoenix dactylifera PDK_20s1318331g001 I 0.626
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.623
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.623
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.623
29983.m003123 Ricinus communis 29983.m003123 I 0.623
MDP0000899816 Malus domestica MDP0000899816 I 0.621
mgf020022m Mimulus guttatus mgf020022m I 0.620
Gorai.007G016800 Gossypium raimondii Gorai.007G016800 I 0.620
Pm019693 Prunus mume Pm019693 I 0.618
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I 0.616
PRUPE_ppa011221mg Prunus persica PRUPE_ppa011221mg I 0.616
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I 0.614
Solyc03g034120.2 Solanum lycopersicum Solyc03g034120.2 I 0.613
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.613
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.612
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.612
AMTR_s00040p00235500 Amborella trichopoda AMTR_s00040p00235500 I 0.606
Cla021437 Citrullus lanatus Cla021437 I 0.606
Gorai.008G258900 Gossypium raimondii Gorai.008G258900 I 0.606
Cucsa.259560 Cucumis sativus Cucsa.259560 I 0.606
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.603
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.603
VIT_02s0025g02590 Vitis vinifera VIT_02s0025g02590 I 0.603
Ca_20151 Cicer arietinum Ca_20151 I 0.600
BRADI3G50220 Brachypodium distachyon BRADI3G50220 I 0.599