CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pm019693
(
Prunus mume
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Pm019693
T226669_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATHB-7
M02043_2.00
Arabidopsis thaliana
NHWTGATTGN
NCAATCAWDN
PBM
Weirauch et al.(2014)
pTH8090
0.771
0.754
ATHB-7
M06911_2.00
Arabidopsis thaliana
NHYCAATCATTSW
WSAATGATTGRDN
Dap-seq
OMalley et al.(2016)
ATHB7_col_a
0.771
0.754
ATHB-12
M00865_2.00
Arabidopsis thaliana
NNNNNNNN
NNNNNNNN
PBM
Franco-Zorrilla et al.(2014)
ATHB12
0.642
0.754
ATHB-12
M02045_2.00
Arabidopsis thaliana
BHWWWWWWDV
BHWWWWWWDV
PBM
Weirauch et al.(2014)
pTH7207
0.642
0.754
ATHB-6
M02040_2.00
Arabidopsis thaliana
HATNATTDN
NHAATNATD
PBM
Weirauch et al.(2014)
pTH7670
0.637
0.632
ATHB-6
M06909_2.00
Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN
Dap-seq
OMalley et al.(2016)
ATHB6_col_a
0.637
0.632
ATHB-6
M06910_2.00
Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN
Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a
0.637
0.632
ATHB-16
M02050_2.00
Arabidopsis thaliana
YAATMATT
AATKATTR
PBM
Weirauch et al.(2014)
pTH7270
0.637
0.614
ATHB-5
M06932_2.00
Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_col_a
0.623
0.667
ATHB-5
M06933_2.00
Arabidopsis thaliana
NYAATMATTN
NAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a
0.623
0.667
ATHB-5
M02684_2.00
Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG
SELEX
Mathelier et al.(2014)
MA0110.2
0.623
0.667
ATHB-5
M10630_2.00
Arabidopsis thaliana
CAATVATTG
CAATBATTG
Transfac
Matys et al.(2006)
P$ATHB5_01
0.623
0.667
ATHB-13
M06900_2.00
Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB13_col_a
0.612
0.632
ATHB-13
M06901_2.00
Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN
Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a
0.612
0.632
estExt_gwp_gw1.C_70211
M02220_2.00
Physcomitrella patens
HMATNANDNN
NNHNTNATKD
PBM
Weirauch et al.(2014)
pTH8489
0.607
0.649
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pm019693
Homeodomain
32
88
SKNQRRFTDEQIRLLESIFEADSKLEPRRKVQVARELGLQPRQVAIWFQNRRARWKS
Links
Other
Homeodomain
family TFs
Other
Prunus mume
TFs
454 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy