Pm026270 (Prunus mume)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pm026270 T226683_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATHB-51
M00867_2.00
Arabidopsis thaliana
ATWATKNN

NNMATWAT
PBM
Franco-Zorrilla et al.(2014)
ATHB51
0.787 0.860
ATHB-51
M06927_2.00
Arabidopsis thaliana
DNCAATAATTGAD

HTCAATTATTGNH
Dap-seq
OMalley et al.(2016)
LMI1_col_a
0.787 0.860
ATHB-51
M06928_2.00
Arabidopsis thaliana
NDNCAATAATTGA

TCAATTATTGNHN
Dap-seq
OMalley et al.(2016)
LMI1_colamp_a
0.787 0.860
ATHB-22
M02041_2.00
Arabidopsis thaliana
NNATAATWWWNNN

NNNWWWATTATNN
PBM
Weirauch et al.(2014)
pTH5883
0.753 0.719
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.689 0.614
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.689 0.614
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD

HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.669 0.596
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD

HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.669 0.596
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm026270 Homeodomain 64 120

Links

Other Homeodomain family TFs
Other Prunus mume TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29815.m000499 Ricinus communis 29815.m000499 I 0.830
29822.m003500 Ricinus communis 29822.m003500 I 0.689
29983.m003123 Ricinus communis 29983.m003123 I 0.665
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I 0.674
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.677
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.719
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.669
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.753
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.689
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.787
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.661
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.669
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.748
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.787
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.661
Bo12274s010 Brassica oleracea Bo12274s010 I 0.665
Bo1g158730 Brassica oleracea Bo1g158730 I 0.669
Bo1g158930 Brassica oleracea Bo1g158930 I 0.601
Bo2g005230 Brassica oleracea Bo2g005230 I 0.771
Bo2g012410 Brassica oleracea Bo2g012410 I 0.689
Bo2g042250 Brassica oleracea Bo2g042250 I 0.661
Bo3g002560 Brassica oleracea Bo3g002560 I 0.783
Bo3g010120 Brassica oleracea Bo3g010120 I 0.689
Bo4g034490 Brassica oleracea Bo4g034490 I 0.757
Bo9g165360 Brassica oleracea Bo9g165360 I 0.689
Bo9g181710 Brassica oleracea Bo9g181710 I 0.616
Bo9g181720 Brassica oleracea Bo9g181720 I 0.787
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.669
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I 0.672
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.787
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.794
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.661
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.689
Bra005259 Brassica rapa Bra005259 I 0.757
Bra006285 Brassica rapa Bra006285 I 0.689
Bra008717 Brassica rapa Bra008717 I 0.689
Bra009510 Brassica rapa Bra009510 I 0.787
Bra022687 Brassica rapa Bra022687 I 0.661
Bra023506 Brassica rapa Bra023506 I 0.689
Bra028820 Brassica rapa Bra028820 I 0.771
Bra039135 Brassica rapa Bra039135 I 0.669
Bra040519 Brassica rapa Bra040519 I 0.601
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.682
Cagra.0154s0024 Capsella grandiflora Cagra.0154s0024 I 0.670
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.787
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.794
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.765
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.689
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.669
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.661
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.689
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.787
Carubv10002831m.g Capsella rubella Carubv10002831m.g I 0.668
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.765
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.669
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.794
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.661
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.689
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.830
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.799
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.689
Ca_00750 Cicer arietinum Ca_00750 I 0.678
Ca_10527 Cicer arietinum Ca_10527 I 0.689
Ca_20151 Cicer arietinum Ca_20151 I 0.760
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.689
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.623
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.689
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.798
Cla010510 Citrullus lanatus Cla010510 I 0.689
Cla018017 Citrullus lanatus Cla018017 I 0.799
Cla018641 Citrullus lanatus Cla018641 I 0.772
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.772
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.689
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.799
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.679
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.745
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.681
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.670
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.689
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.829
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.656
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.676
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.615
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.689
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.822
GLYMA03G34710 Glycine max GLYMA03G34710 I 0.656
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.656
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.689
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.802
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.656
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.802
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.689
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.689
GLYMA19G37380 Glycine max GLYMA19G37380 I 0.678
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.689
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.635
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.792
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.861
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.689
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.799
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.613
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.682
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.682
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.689
GSMUA_Achr10G27420_001 Musa acuminata GSMUA_Achr10G27420_001 I 0.600
GSMUA_Achr3G06190_001 Musa acuminata GSMUA_Achr3G06190_001 I 0.601
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.689
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.683
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.689
HAT7 Arabidopsis thaliana AT5G15150 I 0.689
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.802
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.635
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.799
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.635
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.799
MDP0000119544 Malus domestica MDP0000119544 I 0.862
MDP0000124827 Malus domestica MDP0000124827 I 0.689
MDP0000134241 Malus domestica MDP0000134241 I 0.862
MDP0000146339 Malus domestica MDP0000146339 I 0.665
MDP0000311522 Malus domestica MDP0000311522 I 0.643
MDP0000737128 Malus domestica MDP0000737128 I 0.689
MDP0000738604 Malus domestica MDP0000738604 I 0.862
MDP0000909160 Malus domestica MDP0000909160 I 0.634
mgf013301m Mimulus guttatus mgf013301m I 0.635
mgf014732m Mimulus guttatus mgf014732m I 0.613
mgf019824m Mimulus guttatus mgf019824m I 0.790
mgf022748m Mimulus guttatus mgf022748m I 0.779
mgf025174m Mimulus guttatus mgf025174m I 0.620
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.745
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.689
MTR_7g103340 Medicago truncatula MTR_7g103340 I 0.676
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.623
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.798
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.689
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.682
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.682
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.653
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.830
PGSC0003DMG400017775 Solanum tuberosum PGSC0003DMG400017775 I 0.611
PGSC0003DMG400017776 Solanum tuberosum PGSC0003DMG400017776 I 0.611
PGSC0003DMG400017787 Solanum tuberosum PGSC0003DMG400017787 I 0.611
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.628
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.658
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.615
PK15535.1 Cannabis sativa PK15535.1 I 0.855
PK20392.1 Cannabis sativa PK20392.1 D 0.689
Pm011328 Prunus mume Pm011328 I 0.667
Pm015861 Prunus mume Pm015861 I 0.689
Pm018314 Prunus mume Pm018314 I 0.676
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.635
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.830
POPTR_0007s01370 Populus trichocarpa POPTR_0007s01370 I 0.625
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.635
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.665
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.689
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.676
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.865
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.667
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.689
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.635
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.816
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.689
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.689
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.665
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.665
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.682
Si030983m.g Setaria italica Si030983m.g I 0.682
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.658
Solyc03g034110.2 Solanum lycopersicum Solyc03g034110.2 I 0.611
Solyc03g034120.2 Solanum lycopersicum Solyc03g034120.2 I 0.601
Solyc03g034130.2 Solanum lycopersicum Solyc03g034130.2 I 0.605
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.616
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.830
TCM_018470 Theobroma cacao TCM_018470 I 0.689
TCM_022391 Theobroma cacao TCM_022391 I 0.833
TCM_031644 Theobroma cacao TCM_031644 I 0.635
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.689
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.787
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.661
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.755
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.742
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.669
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.807
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.638
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.652
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.696
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.679