CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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28307.m000017
(
Ricinus communis
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
28307.m000017
T226960_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATHB-6
M02040_2.00
Arabidopsis thaliana
HATNATTDN
NHAATNATD
PBM
Weirauch et al.(2014)
pTH7670
0.472
1.000
ATHB-6
M06909_2.00
Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN
Dap-seq
OMalley et al.(2016)
ATHB6_col_a
0.472
1.000
ATHB-6
M06910_2.00
Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN
Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a
0.472
1.000
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
28307.m000017
Homeodomain
1
33
LEPERKVKLAQELGLQPRQVAVWFQNRRARWKT
Links
Other
Homeodomain
family TFs
Other
Ricinus communis
TFs
543 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy