29822.m003500 (Ricinus communis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 29822.m003500 T226982_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.862 0.946
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.862 0.946
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD

HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.846 0.946
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD

HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.846 0.946
ATHB-13
M06900_2.00
Arabidopsis thaliana
HYAATAATTDD

HHAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB13_col_a
0.724 0.911
ATHB-13
M06901_2.00
Arabidopsis thaliana
NYAATAATTRW

WYAATTATTRN
Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a
0.724 0.911
ATHB-51
M00867_2.00
Arabidopsis thaliana
ATWATKNN

NNMATWAT
PBM
Franco-Zorrilla et al.(2014)
ATHB51
0.711 0.607
ATHB-51
M06927_2.00
Arabidopsis thaliana
DNCAATAATTGAD

HTCAATTATTGNH
Dap-seq
OMalley et al.(2016)
LMI1_col_a
0.711 0.607
ATHB-51
M06928_2.00
Arabidopsis thaliana
NDNCAATAATTGA

TCAATTATTGNHN
Dap-seq
OMalley et al.(2016)
LMI1_colamp_a
0.711 0.607
ATHB-22
M02041_2.00
Arabidopsis thaliana
NNATAATWWWNNN

NNNWWWATTATNN
PBM
Weirauch et al.(2014)
pTH5883
0.709 0.643
estExt_gwp_gw1.C_70211
M02220_2.00
Physcomitrella patens
HMATNANDNN

NNHNTNATKD
PBM
Weirauch et al.(2014)
pTH8489
0.693 0.804
ATHB-5
M06932_2.00
Arabidopsis thaliana
NYAATMATTND

HNAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_col_a
0.677 0.804
ATHB-5
M06933_2.00
Arabidopsis thaliana
NYAATMATTN

NAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a
0.677 0.804
ATHB-5
M02684_2.00
Arabidopsis thaliana
CAATVATTGVVSV

BSBBCAATBATTG
SELEX
Mathelier et al.(2014)
MA0110.2
0.677 0.804
ATHB-5
M10630_2.00
Arabidopsis thaliana
CAATVATTG

CAATBATTG
Transfac
Matys et al.(2006)
P$ATHB5_01
0.677 0.804
ATHB-6
M02040_2.00
Arabidopsis thaliana
HATNATTDN

NHAATNATD
PBM
Weirauch et al.(2014)
pTH7670
0.663 0.786
ATHB-16
M02050_2.00
Arabidopsis thaliana
YAATMATT

AATKATTR
PBM
Weirauch et al.(2014)
pTH7270
0.663 0.786
ATHB-6
M06909_2.00
Arabidopsis thaliana
NNNHATKATTR

YAATMATDNNN
Dap-seq
OMalley et al.(2016)
ATHB6_col_a
0.663 0.786
ATHB-6
M06910_2.00
Arabidopsis thaliana
NCAATAATTRN

NYAATTATTGN
Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a
0.663 0.786
HAT5
M06914_2.00
Arabidopsis thaliana
NHAATAATTDW

WHAATTATTDN
Dap-seq
OMalley et al.(2016)
HAT5_col_a
0.657 0.804
HAT5
M06915_2.00
Arabidopsis thaliana
WNYAATAATTRWDN

NHWYAATTATTRNW
Dap-seq
OMalley et al.(2016)
HAT5_colamp_a
0.657 0.804
HAT5
M02683_2.00
Arabidopsis thaliana
SCAATAATTNNV

BNNAATTATTGS
SELEX
Mathelier et al.(2014)
MA0008.2
0.657 0.804
HAT5
M10624_2.00
Arabidopsis thaliana
YSCAATAATTNNVN

NBNNAATTATTGSR
Transfac
Matys et al.(2006)
P$ATHB1_01
0.657 0.804
ATHB-12
M00865_2.00
Arabidopsis thaliana
NNNNNNNN

NNNNNNNN
PBM
Franco-Zorrilla et al.(2014)
ATHB12
0.618 0.607
ATHB-12
M02045_2.00
Arabidopsis thaliana
BHWWWWWWDV

BHWWWWWWDV
PBM
Weirauch et al.(2014)
pTH7207
0.618 0.607
Q39944_HELAN
M10802_2.00
Helianthus annuus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HAHB4_01
0.606 0.518
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29822.m003500 Homeodomain 75 130

Links

Other Homeodomain family TFs
Other Ricinus communis TFs

780 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000013250 Ailuropoda melanoleuca ENSAMEG00000013250 I 0.000
ENSCJAG00000000591 Callithrix jacchus ENSCJAG00000000591 I 0.000
ENSCSAG00000015269 Chlorocebus sabaeus ENSCSAG00000015269 I 0.000
ENSMLUG00000007060 Myotis lucifugus ENSMLUG00000007060 I 0.000
ENSMPUG00000017543 Mustela putorius furo ENSMPUG00000017543 I 0.000
ENSNLEG00000007013 Nomascus leucogenys ENSNLEG00000007013 I 0.000
ENSP00000217086 Macaca fascicularis ENSP00000217086 I 0.000
ENSPANG00000021792 Papio anubis ENSPANG00000021792 I 0.000
ENSPPYG00000011138 Pongo abelii ENSPPYG00000011138 I 0.000
ENSSTOG00000025002 Ictidomys tridecemlineatus ENSSTOG00000025002 I 0.000
ENSTSYG00000007359 Tarsius syrichta ENSTSYG00000007359 I 0.000
SALL4 Homo sapiens ENSG00000101115 D 0.000
SALL4 Pan troglodytes ENSPTRG00000013631 I 0.000
SALL4 Pteropus vampyrus ENSPVAG00000002075 I 0.000
Sall4 Rattus norvegicus ENSRNOG00000050035 I 0.000
SALL4 Sus scrofa ENSSSCG00000007479 I 0.000
SALL4 Tursiops truncatus ENSTTRG00000007753 I 0.000
SALL4 Ochotona princeps ENSOPRG00000011640 I 0.000
SALL4 Otolemur garnettii ENSOGAG00000013799 I 0.000
SALL4 Gorilla gorilla ENSGGOG00000001832 I 0.000
SALL4 Loxodonta africana ENSLAFG00000004309 I 0.000
SALL4 Microcebus murinus ENSMICG00000000027 I 0.000
SALL4 Felis catus ENSFCAG00000002822 I 0.000
SALL4 Macaca mulatta ENSMMUG00000003870 I 0.000
SALL4 Erinaceus europaeus ENSEEUG00000003649 I 0.000
SALL4 Dasypus novemcinctus ENSDNOG00000040633 I 0.000
SALL4 Bos taurus ENSBTAG00000003101 I 0.000
SALL4 Oryctolagus cuniculus ENSOCUG00000011797 I 0.000
Sall4 Mus musculus ENSMUSG00000027547 D 0.000