cassava16534.m1 (Manihot esculenta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 cassava16534.m1 T227041_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK25011.1
M01253_2.00 		Cannabis sativa
NNWYRMDBNN
NNVHKYRWNN		 PBM
Lambert et al.(2019)
pTH11258 		0.621 0.842
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava16534.m1 Homeodomain 12 68

Links

Other Homeodomain family TFs
Other Manihot esculenta TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29811.m000540 Ricinus communis 29811.m000540 N 0.826
Solyc11g065110.1 Solanum lycopersicum Solyc11g065110.1 I 0.765
PGSC0003DMG400004714 Solanum tuberosum PGSC0003DMG400004714 I 0.747
mgf007720m Mimulus guttatus mgf007720m I 0.710
Solyc12g099760.1 Solanum lycopersicum Solyc12g099760.1 I 0.689
POPTR_0009s07600 Populus trichocarpa POPTR_0009s07600 I 0.632
SapurV1A.0106s0340 Salix purpurea SapurV1A.0106s0340 I 0.632
Thhalv10028592m.g Eutrema salsugineum Thhalv10028592m.g I 0.626
PK25011.1 Cannabis sativa PK25011.1 D 0.621
POPTR_0001s28350 Populus trichocarpa POPTR_0001s28350 I 0.621
Cla008712 Citrullus lanatus Cla008712 I 0.621
MDP0000207866 Malus domestica MDP0000207866 I 0.619
PRUPE_ppa005223mg Prunus persica PRUPE_ppa005223mg I 0.616
Gorai.013G254100 Gossypium raimondii Gorai.013G254100 I 0.615
TCM_040945 Theobroma cacao TCM_040945 I 0.613
GLYMA14G03850 Glycine max GLYMA14G03850 I 0.609
GLYMA04G15260 Glycine max GLYMA04G15260 I 0.609
GLYMA02G44910 Glycine max GLYMA02G44910 I 0.609
Cucsa.087050 Cucumis sativus Cucsa.087050 I 0.607
MTR_3g045830 Medicago truncatula MTR_3g045830 I 0.607
Aquca_014_00610 Aquilegia coerulea Aquca_014_00610 I 0.606
SapurV1A.0042s0570 Salix purpurea SapurV1A.0042s0570 I 0.600