cassava4770.m1 (Manihot esculenta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 cassava4770.m1 T227146_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WOX11
M06916_2.00 		Arabidopsis thaliana
ADTTAATTAVD
HBTAATTAAHT		 Dap-seq
OMalley et al.(2016)
WOX11_col_a 		0.799 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava4770.m1 Homeodomain 23 84

Links

Other Homeodomain family TFs
Other Manihot esculenta TFs

220 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GSMUA_Achr10G05090_001 Musa acuminata GSMUA_Achr10G05090_001 I 0.840
Cucsa.336980 Cucumis sativus Cucsa.336980 I 0.814
cassava15562.m1 Manihot esculenta cassava15562.m1 I 0.814
POPTR_0019s05730 Populus trichocarpa POPTR_0019s05730 I 0.814
30072.m000927 Ricinus communis 30072.m000927 I 0.814
Aquca_014_00949 Aquilegia coerulea Aquca_014_00949 I 0.814
Ciclev10021682m.g Citrus clementina Ciclev10021682m.g I 0.814
GSMUA_Achr6G15910_001 Musa acuminata GSMUA_Achr6G15910_001 I 0.814
TCM_025805 Theobroma cacao TCM_025805 I 0.814
POPTR_0013s06310 Populus trichocarpa POPTR_0013s06310 I 0.814
GSMUA_Achr10G12820_001 Musa acuminata GSMUA_Achr10G12820_001 I 0.814
GSMUA_Achr5G27730_001 Musa acuminata GSMUA_Achr5G27730_001 I 0.814
gene30337-v1.0-hybrid Fragaria vesca gene30337-v1.0-hybrid I 0.814
GSMUA_Achr8G01590_001 Musa acuminata GSMUA_Achr8G01590_001 I 0.814
mgf016673m Mimulus guttatus mgf016673m I 0.814
orange1.1g047211m.g Citrus sinensis orange1.1g047211m.g I 0.814
SapurV1A.0631s0110 Salix purpurea SapurV1A.0631s0110 I 0.814
Gorai.007G346300 Gossypium raimondii Gorai.007G346300 I 0.814
MDP0000524885 Malus domestica MDP0000524885 I 0.814
MDP0000136426 Malus domestica MDP0000136426 I 0.814
SapurV1A.1660s0010 Salix purpurea SapurV1A.1660s0010 I 0.814
Gorai.013G196400 Gossypium raimondii Gorai.013G196400 I 0.814
ORGLA08G0063600 Oryza glaberrima ORGLA08G0063600 I 0.812
OBART03G15820 Oryza barthii OBART03G15820 I 0.812
ORUFI03G16410 Oryza rufipogon ORUFI03G16410 I 0.812
WOX10 Oryza sativa OS08G0242400 I 0.812
MTR_7g086940 Medicago truncatula MTR_7g086940 I 0.812
PGSC0003DMG400027030 Solanum tuberosum PGSC0003DMG400027030 I 0.812
OS03G0325600 Oryza sativa OS03G0325600 I 0.812
ORUFI08G08400 Oryza rufipogon ORUFI08G08400 I 0.812
ORUFI07G27650 Oryza rufipogon ORUFI07G27650 I 0.812
OGLUM03G15990 Oryza glumaepatula OGLUM03G15990 I 0.812
OGLUM08G08120 Oryza glumaepatula OGLUM08G08120 I 0.812
OMERI07G23310 Oryza meridionalis OMERI07G23310 I 0.812
ONIVA08G08030 Oryza nivara ONIVA08G08030 I 0.812
ONIVA07G26430 Oryza nivara ONIVA07G26430 I 0.812
OPUNC03G15320 Oryza punctata OPUNC03G15320 I 0.812
OPUNC07G25100 Oryza punctata OPUNC07G25100 I 0.812
OBART07G26670 Oryza barthii OBART07G26670 I 0.812
OGLUM07G26700 Oryza glumaepatula OGLUM07G26700 I 0.812
ORGLA03G0151500 Oryza glaberrima ORGLA03G0151500 I 0.812
ORGLA07G0211000 Oryza glaberrima ORGLA07G0211000 I 0.812
Solyc06g072890.1 Solanum lycopersicum Solyc06g072890.1 I 0.812
Eucgr.A02149 Eucalyptus grandis Eucgr.A02149 I 0.812
evm.TU.supercontig_73.3 Carica papaya evm.TU.supercontig_73.3 I 0.812
Ca_19701 Cicer arietinum Ca_19701 I 0.812
Ca_08180 Cicer arietinum Ca_08180 I 0.812
VIT_08s0056g01200 Vitis vinifera VIT_08s0056g01200 I 0.812
Pavir.Ba00249 Panicum virgatum Pavir.Ba00249 I 0.812
Pavir.Fb01029 Panicum virgatum Pavir.Fb01029 I 0.812
LjSGA_037808.1 Lotus japonicus LjSGA_037808.1 I 0.812
LjT26C04.20.nd Lotus japonicus LjT26C04.20.nd I 0.812
Pavir.J33010 Panicum virgatum Pavir.J33010 I 0.812
Pavir.J23422 Panicum virgatum Pavir.J23422 I 0.812
Pavir.Ia03448 Panicum virgatum Pavir.Ia03448 I 0.812
TRIUR3_34876 Triticum urartu TRIUR3_34876 I 0.812
Traes_4DL_5E79CC79C Triticum aestivum Traes_4DL_5E79CC79C I 0.812
Si015065m.g Setaria italica Si015065m.g I 0.812
Si030836m.g Setaria italica Si030836m.g I 0.812
Sb07g007600 Sorghum bicolor Sb07g007600 I 0.812
Sb02g043300 Sorghum bicolor Sb02g043300 I 0.812
Sb01g036670 Sorghum bicolor Sb01g036670 I 0.812
Si039112m.g Setaria italica Si039112m.g I 0.812
MTR_6g027390 Medicago truncatula MTR_6g027390 I 0.812
Traes_4AS_EC04D9E8A Triticum aestivum Traes_4AS_EC04D9E8A I 0.812
TRAES3BF079200050CFD_g Triticum aestivum TRAES3BF079200050CFD_g I 0.812
Traes_2DS_B5227B5F6 Triticum aestivum Traes_2DS_B5227B5F6 I 0.812
Traes_2BS_8A1FE01EE Triticum aestivum Traes_2BS_8A1FE01EE I 0.812
PRUPE_ppa026303mg Prunus persica PRUPE_ppa026303mg I 0.812
WOX11 Oryza sativa OS07G0684900 I 0.812
GRMZM2G162481 Zea mays GRMZM2G162481 I 0.812
GLYMA19G29660 Glycine max GLYMA19G29660 I 0.812
GRMZM2G170958 Zea mays GRMZM2G170958 I 0.812
GRMZM2G314064 Zea mays GRMZM2G314064 I 0.812
LPERR03G13850 Leersia perrieri LPERR03G13850 I 0.812
GSMUA_Achr9G05010_001 Musa acuminata GSMUA_Achr9G05010_001 I 0.812
GLYMA03G01000 Glycine max GLYMA03G01000 I 0.812
AMTR_s00119p00100440 Amborella trichopoda AMTR_s00119p00100440 I 0.812
WOX10 Oryza indica BGIOSGA027391 I 0.812
BGIOSGA026413 Oryza indica BGIOSGA026413 I 0.812
WOX6 Oryza indica BGIOSGA010824 I 0.812
BRADI1G17420 Brachypodium distachyon BRADI1G17420 I 0.812
F775_22811 Aegilops tauschii F775_22811 I 0.812
BRADI3G18800 Brachypodium distachyon BRADI3G18800 I 0.812
LPERR07G23470 Leersia perrieri LPERR07G23470 I 0.812
F775_11947 Aegilops tauschii F775_11947 I 0.812
MLOC_65745 Hordeum vulgare MLOC_65745 I 0.812
MLOC_6669 Hordeum vulgare MLOC_6669 I 0.812
Cagra.6254s0027 Capsella grandiflora Cagra.6254s0027 I 0.800
Carubv10003719m.g Capsella rubella Carubv10003719m.g I 0.800
Bra031980 Brassica rapa Bra031980 I 0.800
Bo2g062660 Brassica oleracea Bo2g062660 I 0.800
Carubv10016081m.g Capsella rubella Carubv10016081m.g I 0.800
Cagra.2098s0022 Capsella grandiflora Cagra.2098s0022 I 0.800
Thhalv10015651m.g Eutrema salsugineum Thhalv10015651m.g I 0.800
Bo5g148780 Brassica oleracea Bo5g148780 I 0.800
Thhalv10022222m.g Eutrema salsugineum Thhalv10022222m.g I 0.800
Bostr.19046s0084 Boechera stricta Bostr.19046s0084 I 0.800
Bo9g159820 Brassica oleracea Bo9g159820 I 0.800
WOX12 Arabidopsis thaliana AT5G17810 I 0.800
WOX12 Arabidopsis lyrata Al_scaffold_0006_1694 I 0.800
Bra036446 Brassica rapa Bra036446 I 0.800
Bra023638 Brassica rapa Bra023638 I 0.800
Bo11772s010 Brassica oleracea Bo11772s010 I 0.800
Bra002108 Brassica rapa Bra002108 I 0.800
Bo2g013980 Brassica oleracea Bo2g013980 I 0.800
Bo1g153650 Brassica oleracea Bo1g153650 I 0.800
WOX11 Arabidopsis lyrata fgenesh2_kg.3__312__AT3G03660.1 I 0.799
WOX11 Arabidopsis thaliana AT3G03660 D 0.799
Pm025458 Prunus mume Pm025458 I 0.792
TRIUR3_34808 Triticum urartu TRIUR3_34808 I 0.791
OB08G17020 Oryza brachyantha OB08G17020 I 0.790
mgf017527m Mimulus guttatus mgf017527m I 0.785
LPERR07G23520 Leersia perrieri LPERR07G23520 I 0.779
GSMUA_Achr3G09460_001 Musa acuminata GSMUA_Achr3G09460_001 I 0.767
Sb09g028562 Sorghum bicolor Sb09g028562 I 0.764
GRMZM2G409881 Zea mays GRMZM2G409881 I 0.764
Pavir.Ca00938 Panicum virgatum Pavir.Ca00938 I 0.764
Si025013m.g Setaria italica Si025013m.g I 0.764
PDK_20s13009443g001 Phoenix dactylifera PDK_20s13009443g001 I 0.749
Bra005464 Brassica rapa Bra005464 I 0.748
29900.m001555 Ricinus communis 29900.m001555 I 0.748
Pm010370 Prunus mume Pm010370 I 0.748
Cucsa.046640 Cucumis sativus Cucsa.046640 I 0.748
Cla009819 Citrullus lanatus Cla009819 I 0.748
cassava40675.m1 Manihot esculenta cassava40675.m1 I 0.748
cassava4506.m1 Manihot esculenta cassava4506.m1 I 0.748
Bostr.23794s0703 Boechera stricta Bostr.23794s0703 I 0.748
Gorai.009G165700 Gossypium raimondii Gorai.009G165700 I 0.748
gene29786-v1.0-hybrid Fragaria vesca gene29786-v1.0-hybrid I 0.748
evm.TU.supercontig_7.12 Carica papaya evm.TU.supercontig_7.12 I 0.748
Gorai.011G031300 Gossypium raimondii Gorai.011G031300 I 0.748
Lus10005282.g Linum usitatissimum Lus10005282.g I 0.748
MDP0000729328 Malus domestica MDP0000729328 I 0.748
MTR_7g025010 Medicago truncatula MTR_7g025010 I 0.748
MDP0000232004 Malus domestica MDP0000232004 I 0.748
Bo3g027500 Brassica oleracea Bo3g027500 I 0.748
Ciclev10015562m.g Citrus clementina Ciclev10015562m.g I 0.748
Aquca_036_00007 Aquilegia coerulea Aquca_036_00007 I 0.748
Bo4g041330 Brassica oleracea Bo4g041330 I 0.748
BGIOSGA001059 Oryza indica BGIOSGA001059 I 0.748
Ca_06365 Cicer arietinum Ca_06365 I 0.748
Pavir.Eb02702 Panicum virgatum Pavir.Eb02702 I 0.748
OB01G35000 Oryza brachyantha OB01G35000 I 0.748
Carubv10025224m.g Capsella rubella Carubv10025224m.g I 0.748
Cagra.1195s0012 Capsella grandiflora Cagra.1195s0012 I 0.748
mgf001579m Mimulus guttatus mgf001579m I 0.748
SapurV1A.0270s0270 Salix purpurea SapurV1A.0270s0270 I 0.748
GRMZM2G031882 Zea mays GRMZM2G031882 I 0.748
WOX9 Arabidopsis lyrata Al_scaffold_0004_1872 I 0.748
CM1489.70.nc Lotus japonicus CM1489.70.nc I 0.748
PGSC0003DMG400010725 Solanum tuberosum PGSC0003DMG400010725 I 0.748
Ca_00357 Cicer arietinum Ca_00357 I 0.748
GLYMA13G21860 Glycine max GLYMA13G21860 I 0.748
GLYMA13G24150 Glycine max GLYMA13G24150 I 0.748
POPTR_0011s05980 Populus trichocarpa POPTR_0011s05980 I 0.748
GRMZM2G133972 Zea mays GRMZM2G133972 I 0.748
OS01G0667450 Oryza sativa OS01G0667450 I 0.748
LPERR01G22080 Leersia perrieri LPERR01G22080 I 0.748
ONIVA01G29060 Oryza nivara ONIVA01G29060 I 0.748
OMERI01G23480 Oryza meridionalis OMERI01G23480 I 0.748
GSMUA_Achr9G06660_001 Musa acuminata GSMUA_Achr9G06660_001 I 0.748
ORGLA01G0211300 Oryza glaberrima ORGLA01G0211300 I 0.748
OGLUM01G29670 Oryza glumaepatula OGLUM01G29670 I 0.748
AMTR_s00021p00189010 Amborella trichopoda AMTR_s00021p00189010 I 0.748
GSMUA_Achr8G27170_001 Musa acuminata GSMUA_Achr8G27170_001 I 0.748
PRUPE_ppa019841mg Prunus persica PRUPE_ppa019841mg I 0.748
POPTR_0004s05090 Populus trichocarpa POPTR_0004s05090 I 0.748
TCM_029776 Theobroma cacao TCM_029776 I 0.748
Bra022960 Brassica rapa Bra022960 I 0.748
Solyc02g077390.1 Solanum lycopersicum Solyc02g077390.1 I 0.748
orange1.1g036145m.g Citrus sinensis orange1.1g036145m.g I 0.748
OBART01G25820 Oryza barthii OBART01G25820 I 0.748
WOX9 Arabidopsis thaliana AT2G33880 I 0.748
MTR_2g015000 Medicago truncatula MTR_2g015000 I 0.748
GLYMA07G32430 Glycine max GLYMA07G32430 I 0.748
VIT_10s0003g00560 Vitis vinifera VIT_10s0003g00560 I 0.748
Thhalv10016784m.g Eutrema salsugineum Thhalv10016784m.g I 0.748
SapurV1A.0012s0880 Salix purpurea SapurV1A.0012s0880 I 0.748
GLYMA10G08030 Glycine max GLYMA10G08030 I 0.748
Eucgr.D00577 Eucalyptus grandis Eucgr.D00577 I 0.747
TRAES3BF022100010CFD_g Triticum aestivum TRAES3BF022100010CFD_g I 0.743
Si004249m.g Setaria italica Si004249m.g I 0.743
MLOC_7925 Hordeum vulgare MLOC_7925 I 0.743
OPUNC05G23480 Oryza punctata OPUNC05G23480 I 0.732
ONIVA05G27800 Oryza nivara ONIVA05G27800 I 0.732
BGIOSGA020366 Oryza indica BGIOSGA020366 I 0.732
ORGLA05G0223800 Oryza glaberrima ORGLA05G0223800 I 0.732
ORUFI05G27780 Oryza rufipogon ORUFI05G27780 I 0.732
OBART05G25900 Oryza barthii OBART05G25900 I 0.732
OGLUM05G27500 Oryza glumaepatula OGLUM05G27500 I 0.732
F775_23099 Aegilops tauschii F775_23099 I 0.732
OS05G0564500 Oryza sativa OS05G0564500 I 0.732
Pavir.Ib01521 Panicum virgatum Pavir.Ib01521 I 0.728
gene28935-v1.0-hybrid Fragaria vesca gene28935-v1.0-hybrid I 0.725
OB10G14840 Oryza brachyantha OB10G14840 I 0.716
Bra022008 Brassica rapa Bra022008 I 0.711
WOX8 Arabidopsis lyrata scaffold_800245.1 I 0.711
Bo2g127670 Brassica oleracea Bo2g127670 I 0.711
Bostr.8819s0128 Boechera stricta Bostr.8819s0128 I 0.711
Cagra.2097s0014 Capsella grandiflora Cagra.2097s0014 I 0.711
Carubv10027735m.g Capsella rubella Carubv10027735m.g I 0.711
WOX8 Arabidopsis thaliana AT5G45980 I 0.707
Thhalv10001099m.g Eutrema salsugineum Thhalv10001099m.g I 0.691
MTR_4g088080 Medicago truncatula MTR_4g088080 I 0.678
MTR_4g088070 Medicago truncatula MTR_4g088070 I 0.661
SELMODRAFT_123325 Selaginella moellendorffii SELMODRAFT_123325 I 0.659
SELMODRAFT_115439 Selaginella moellendorffii SELMODRAFT_115439 I 0.659
Bo9g070070 Brassica oleracea Bo9g070070 I 0.646
Bra017448 Brassica rapa Bra017448 I 0.646
PDK_20s1465351g003 Phoenix dactylifera PDK_20s1465351g003 I 0.642
Bo8g106350 Brassica oleracea Bo8g106350 I 0.637
Thhalv10009654m.g Eutrema salsugineum Thhalv10009654m.g I 0.637
Bra026791 Brassica rapa Bra026791 I 0.637
ORGLA07G0240100 Oryza glaberrima ORGLA07G0240100 N 0.609
OMERI07G13960 Oryza meridionalis OMERI07G13960 N 0.609
OS07G0533201 Oryza sativa OS07G0533201 N 0.609
SELMODRAFT_419270 Selaginella moellendorffii SELMODRAFT_419270 I 0.600
SELMODRAFT_417553 Selaginella moellendorffii SELMODRAFT_417553 I 0.600
mgf023275m Mimulus guttatus mgf023275m I 0.599