CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cucsa.090630
(
Cucumis sativus
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Cucsa.090630
T227175_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
KNAT6
M02037_2.00
Arabidopsis thaliana
NNWGACNNNN
NNNNGTCWNN
PBM
Weirauch et al.(2014)
pTH7296
0.677
0.789
KNOX3_HORVU
M10790_2.00
Hordeum vulgare
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$KNOX3_01
0.659
0.719
GRMZM2G135447
M02139_2.00
Zea mays
DTGACRKS
SMYGTCAH
PBM
Weirauch et al.(2014)
pTH6328
0.640
0.737
GRMZM2G087741
M02138_2.00
Zea mays
NNTGACRKCN
NGMYGTCANN
PBM
Weirauch et al.(2014)
pTH5816
0.624
0.754
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.090630.1
Homeodomain
227
286
KRKKEKLPKDARMALLDWWNTHYKWPYPTEEEKSKLSVTTGLDQKQINNWFINQRKRHWK
Cucsa.090630.3
Homeodomain
164
223
KRKKEKLPKDARMALLDWWNTHYKWPYPTEEEKSKLSVTTGLDQKQINNWFINQRKRHWK
Links
Other
Homeodomain
family TFs
Other
Cucumis sativus
TFs
293 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy