CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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e_gw.260.36.1
(
Branchiostoma floridae
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
e_gw.260.36.1
T227279_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
hox12
M02075_2.00
Ciona intestinalis
TTWAYKAY
RTMRTWAA
PBM
Weirauch et al.(2014)
pTH6299
0.639
0.579
NEMVEDRAFT_v1g8907
M02154_2.00
Nematostella vectensis
NTAATDRNNN
NNNYHATTAN
PBM
Weirauch et al.(2014)
pTH6483
0.625
0.509
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw.260.36.1
Homeodomain
1
57
RPKRRPYSKYQLNELENEYVQNQYISRDKRLQLSQKLNLTERQVKIWFQNRRIKQKK
Links
Other
Homeodomain
family TFs
Other
Branchiostoma floridae
TFs
25 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
e_gw.260.37.1
Branchiostoma floridae
e_gw.260.37.1
I
0.867
Ocbimv22015181m.g
Octopus bimaculoides
Ocbimv22015181m.g
N
0.732
CGI_10027385
Crassostrea gigas
CGI_10027385
N
0.726
LotgiG100031
Lottia gigantea
LotgiG100031
N
0.726
SMU15029209
Schmidtea mediterranea
SMU15029209
I
0.720
SPU_000388
Strongylocentrotus purpuratus
SPU_000388
I
0.684
Sakowv30000860m.g
Saccoglossus kowalevskii
Sakowv30000860m.g
I
0.670
SPU_002631
Strongylocentrotus purpuratus
SPU_002631
I
0.664
gw.260.84.1
Branchiostoma floridae
gw.260.84.1
I
0.656
gw.260.83.1
Branchiostoma floridae
gw.260.83.1
I
0.656
csin103306
Clonorchis sinensis
csin103306
I
0.645
T265_10106
Opisthorchis viverrini
T265_10106
I
0.645
ENSCSAVG00000008685
Ciona savignyi
ENSCSAVG00000008685
I
0.639
hox12
Ciona intestinalis
ENSCING00000007040
D
0.639
SNAPOd2T00025381001
Oikopleura dioica
SNAPOd2T00025381001
I
0.634
ENSPMAG00000010089
Petromyzon marinus
ENSPMAG00000010089
I
0.632
Sakowv30025348m.g
Saccoglossus kowalevskii
Sakowv30025348m.g
I
0.630
VSX2
Sus scrofa
ENSSSCG00000002363
I
0.627
NEMVEDRAFT_v1g8907
Nematostella vectensis
NEMVEDRAFT_v1g8907
D
0.625
HmN_000400200
Hymenolepis microstoma
HmN_000400200
I
0.618
SNAPOd2T00003836001
Oikopleura dioica
SNAPOd2T00003836001
I
0.612
L596_g15516
Steinernema carpocapsae
L596_g15516
I
0.605
ENSCSAVG00000005769
Ciona savignyi
ENSCSAVG00000005769
N
0.605
ENSCING00000011300
Ciona intestinalis
ENSCING00000011300
N
0.605
gw.38.210.1
Branchiostoma floridae
gw.38.210.1
I
0.599