e_gw.260.36.1 (Branchiostoma floridae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 e_gw.260.36.1 T227279_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
hox12
M02075_2.00
Ciona intestinalis
TTWAYKAY

RTMRTWAA
PBM
Weirauch et al.(2014)
pTH6299
0.639 0.579
NEMVEDRAFT_v1g8907
M02154_2.00
Nematostella vectensis
NTAATDRNNN

NNNYHATTAN
PBM
Weirauch et al.(2014)
pTH6483
0.625 0.509
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
e_gw.260.36.1 Homeodomain 1 57

Links

Other Homeodomain family TFs
Other Branchiostoma floridae TFs

25 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
hox12 Ciona intestinalis ENSCING00000007040 D 0.639
NEMVEDRAFT_v1g8907 Nematostella vectensis NEMVEDRAFT_v1g8907 D 0.625
T265_10106 Opisthorchis viverrini T265_10106 I 0.645
gw.38.210.1 Branchiostoma floridae gw.38.210.1 I 0.599
Sakowv30000860m.g Saccoglossus kowalevskii Sakowv30000860m.g I 0.670
Sakowv30025348m.g Saccoglossus kowalevskii Sakowv30025348m.g I 0.630
SMU15029209 Schmidtea mediterranea SMU15029209 I 0.720
SNAPOd2T00003836001 Oikopleura dioica SNAPOd2T00003836001 I 0.612
SNAPOd2T00025381001 Oikopleura dioica SNAPOd2T00025381001 I 0.634
csin103306 Clonorchis sinensis csin103306 I 0.645
HmN_000400200 Hymenolepis microstoma HmN_000400200 I 0.618
L596_g15516 Steinernema carpocapsae L596_g15516 I 0.605
gw.260.84.1 Branchiostoma floridae gw.260.84.1 I 0.656
gw.260.83.1 Branchiostoma floridae gw.260.83.1 I 0.656
ENSCSAVG00000008685 Ciona savignyi ENSCSAVG00000008685 I 0.639
ENSPMAG00000010089 Petromyzon marinus ENSPMAG00000010089 I 0.632
VSX2 Sus scrofa ENSSSCG00000002363 I 0.627
SPU_000388 Strongylocentrotus purpuratus SPU_000388 I 0.684
SPU_002631 Strongylocentrotus purpuratus SPU_002631 I 0.664
e_gw.260.37.1 Branchiostoma floridae e_gw.260.37.1 I 0.867
LotgiG100031 Lottia gigantea LotgiG100031 N 0.726
Ocbimv22015181m.g Octopus bimaculoides Ocbimv22015181m.g N 0.732
ENSCSAVG00000005769 Ciona savignyi ENSCSAVG00000005769 N 0.605
ENSCING00000011300 Ciona intestinalis ENSCING00000011300 N 0.605
CGI_10027385 Crassostrea gigas CGI_10027385 N 0.726