CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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e_gw.260.37.1
(
Branchiostoma floridae
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
e_gw.260.37.1
T227280_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
hox12
M02075_2.00
Ciona intestinalis
TTWAYKAY
RTMRTWAA
PBM
Weirauch et al.(2014)
pTH6299
0.639
0.579
NEMVEDRAFT_v1g8907
M02154_2.00
Nematostella vectensis
NTAATDRNNN
NNNYHATTAN
PBM
Weirauch et al.(2014)
pTH6483
0.625
0.509
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw.260.37.1
Homeodomain
1
57
RPKRRPYSKYQLNELENEYVQNQYISRDKRLQLSQKLNLTERQVKIWFQNRRIKQKK
Links
Other
Homeodomain
family TFs
Other
Branchiostoma floridae
TFs
25 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy