CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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e_gw.549.21.1
(
Branchiostoma floridae
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
e_gw.549.21.1
T227314_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
eve
M00556_2.00
Drosophila melanogaster
NNTAATTARN
NYTAATTANN
PBM
Busser et al.(2012a)
Eve
0.605
0.860
eve
M02115_2.00
Drosophila melanogaster
NTAATNDNN
NNHNATTAN
PBM
Weirauch et al.(2014)
pTH6436
0.605
0.860
eve
M03794_2.00
Drosophila melanogaster
VYTAATKASN
NSTMATTARB
SELEX
Nitta et al.(2015)
eve_1
0.605
0.860
eve
M06486_2.00
Drosophila melanogaster
YTAATKA
TMATTAR
B1H
Mathelier et al.(2014)
MA0221.1
0.605
0.860
eve
M06240_2.00
Drosophila melanogaster
DYTAATKA
TMATTARH
B1H
Zhu et al.(2011)
Eve_Cell_FBgn0000606
0.605
0.860
eve
M06241_2.00
Drosophila melanogaster
HKBTAAYNDTKY
RMAHNRTTAVMD
B1H
Zhu et al.(2011)
eve_FlyReg_FBgn0000606
0.605
0.860
eve
M06242_2.00
Drosophila melanogaster
NYTAATKA
TMATTARN
B1H
Zhu et al.(2011)
Eve_SOLEXA_FBgn0000606
0.605
0.860
eve
M09678_2.00
Drosophila melanogaster
NKHTAATKD
HMATTADMN
Misc
Kulakovskiy et al.(2009)
eve
0.605
0.860
eve
M10786_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$EVE_Q6
0.605
0.860
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw.549.21.1
Homeodomain
2
51
RRYRTAFTREQLARLEKEFYRENYVSRPRRCELAAQLNLPETTIKVRQQQ
Links
Other
Homeodomain
family TFs
Other
Branchiostoma floridae
TFs
174 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PXEA_0001895501
Protopolystoma xenopodis
PXEA_0001895501
I
0.728
WUBG_03794
Wuchereria bancrofti
WUBG_03794
N
0.728
NKX1-1
Pan troglodytes
ENSPTRG00000041220
I
0.720
nRc.2.0.1.g34717
Romanomermis culicivorax
nRc.2.0.1.g34717
I
0.718
C_01032
Schistosoma haematobium
C_01032
I
0.716
SMTD_0002280601
Schistosoma mattheei
SMTD_0002280601
I
0.716
Smp_189380
Schistosoma mansoni
Smp_189380
I
0.716
SROB_0001108301
Schistosoma rodhaini
SROB_0001108301
I
0.716
ENSMGAG00000015339
Meleagris gallopavo
ENSMGAG00000015339
I
0.716
C_01031
Schistosoma haematobium
C_01031
I
0.716
ISCW024267
Ixodes scapularis
ISCW024267
I
0.713
ENSGMOG00000015411
Gadus morhua
ENSGMOG00000015411
I
0.711
MEOX1
Bos taurus
ENSBTAG00000015751
I
0.711
PDX1
Dasypus novemcinctus
ENSDNOG00000003213
I
0.710
DILT_0000923301
Diphyllobothrium latum
DILT_0000923301
I
0.705
WBGene00245266
Onchocerca volvulus
WBGene00245266
I
0.695
GPUH_0002067401
Gongylonema pulchrum
GPUH_0002067401
I
0.695
ANCDUO_14705
Ancylostoma duodenale
ANCDUO_14705
I
0.695
OFLC_0000069201
Onchocerca flexuosa
OFLC_0000069201
I
0.695
ANCCEY_05038
Ancylostoma ceylanicum
ANCCEY_05038
I
0.695
EVEC_0000662001
Enterobius vermicularis
EVEC_0000662001
I
0.695
TCLT_0000599001
Thelazia callipaeda
TCLT_0000599001
I
0.695
Cmyd_10002827
Chelonia mydas
Cmyd_10002827
N
0.690
ACOM034313
Anopheles coluzzii
ACOM034313
I
0.690
maker-nMf.1.1.scaf00145-augustus-gene-0.13
Meloidogyne floridensis
maker-nMf.1.1.scaf00145-augustus-gene-0.13
I
0.688
BGLB003458
Biomphalaria glabrata
BGLB003458
I
0.687
nOo.2.0.1.g00955
Onchocerca ochengi
nOo.2.0.1.g00955
I
0.685
ACAC_0000394201
Angiostrongylus cantonensis
ACAC_0000394201
I
0.685
ASIM_0001653501
Anisakis simplex
ASIM_0001653501
I
0.685
EEL_0000392901
Elaeophora elaphi
EEL_0000392901
I
0.685
ASIM_0000400001
Anisakis simplex
ASIM_0000400001
I
0.685
CGOC_0000550601
Cylicostephanus goldi
CGOC_0000550601
I
0.685
DME_0001008101
Dracunculus medinensis
DME_0001008101
I
0.685
nLs.2.1.2.g00296
Litomosoides sigmodontis
nLs.2.1.2.g00296
I
0.685
NECAME_15973
Necator americanus
NECAME_15973
I
0.685
TELCIR_07155
Teladorsagia circumcincta
TELCIR_07155
I
0.685
WUBG_02861
Wuchereria bancrofti
WUBG_02861
I
0.685
TCNE_0001765901
Toxocara canis
TCNE_0001765901
I
0.685
ENSMPUG00000006459
Mustela putorius furo
ENSMPUG00000006459
I
0.682
ACHR010176
Anopheles christyi
ACHR010176
N
0.676
PEQ_0000367601
Parascaris equorum
PEQ_0000367601
I
0.675
NBR_0000568501
Nippostrongylus brasiliensis
NBR_0000568501
I
0.675
TCLT_0000305201
Thelazia callipaeda
TCLT_0000305201
I
0.675
ENSGMOG00000006424
Gadus morhua
ENSGMOG00000006424
I
0.675
ENSGACG00000020715
Gasterosteus aculeatus
ENSGACG00000020715
I
0.675
ALX1
Gorilla gorilla
ENSGGOG00000000168
I
0.674
NEMVEDRAFT_v1g48953
Nematostella vectensis
NEMVEDRAFT_v1g48953
I
0.672
NEMVEDRAFT_v1g49015
Nematostella vectensis
NEMVEDRAFT_v1g49015
I
0.672
ENSTSYG00000012674
Tarsius syrichta
ENSTSYG00000012674
I
0.671
BARHL1
Felis catus
ENSFCAG00000007105
I
0.671
Afo_R001648
Aptenodytes forsteri
Afo_R001648
I
0.671
ENSPFOG00000017586
Poecilia formosa
ENSPFOG00000017586
I
0.671
ENSORLG00000012370
Oryzias latipes
ENSORLG00000012370
I
0.671
LotgiG120200
Lottia gigantea
LotgiG120200
I
0.669
Aan_R000875
Calypte anna
Aan_R000875
I
0.669
CapteG30874
Capitella teleta
CapteG30874
I
0.669
Sakowv30043910m.g
Saccoglossus kowalevskii
Sakowv30043910m.g
I
0.669
CGI_10009942
Crassostrea gigas
CGI_10009942
I
0.669
Alligator_sinensis_CCG007467.1
Alligator sinensis
Alligator_sinensis_CCG007467.1
I
0.669
Smp_125600
Schistosoma mansoni
Smp_125600
I
0.669
MESCA003890
Megaselia scalaris
MESCA003890
I
0.669
ENSMGAG00000006701
Meleagris gallopavo
ENSMGAG00000006701
I
0.669
BARHL2
Vicugna pacos
ENSVPAG00000005913
I
0.669
BARHL2
Monodelphis domestica
ENSMODG00000012056
I
0.669
CLEC007879
Cimex lectularius
CLEC007879
I
0.667
ACUA028387
Anopheles culicifacies
ACUA028387
I
0.667
PXEA_0002510601
Protopolystoma xenopodis
PXEA_0002510601
I
0.667
TASK_0000431401
Taenia asiatica
TASK_0000431401
I
0.667
SINV18014
Solenopsis invicta
SINV18014
I
0.667
TsM_000296500
Taenia solium
TsM_000296500
I
0.667
DAPPUDRAFT_55144
Daphnia pulex
DAPPUDRAFT_55144
I
0.667
MESCA011262
Megaselia scalaris
MESCA011262
I
0.667
TRE_0000860801
Trichobilharzia regenti
TRE_0000860801
I
0.667
ASIS004766
Anopheles sinensis
ASIS004766
I
0.667
LLOJ004353
Lutzomyia longipalpis
LLOJ004353
I
0.667
ENSGMOG00000011340
Gadus morhua
ENSGMOG00000011340
N
0.666
tetur14g02380
Tetranychus urticae
tetur14g02380
I
0.666
DME_0000365001
Dracunculus medinensis
DME_0000365001
I
0.666
LCUP002254
Lucilia cuprina
LCUP002254
N
0.665
ANCDUO_02875
Ancylostoma duodenale
ANCDUO_02875
I
0.664
GPUH_0000001901
Gongylonema pulchrum
GPUH_0000001901
I
0.664
WUBG_01783
Wuchereria bancrofti
WUBG_01783
I
0.664
nOo.2.0.1.g01207
Onchocerca ochengi
nOo.2.0.1.g01207
I
0.664
WBGene00242173
Onchocerca volvulus
WBGene00242173
I
0.664
LOAG_02387
Loa loa
LOAG_02387
I
0.664
SCUD_0000812901
Schistosoma curassoni
SCUD_0000812901
I
0.663
ALUE_0001765001
Ascaris lumbricoides
ALUE_0001765001
I
0.663
ENSPFOG00000024523
Poecilia formosa
ENSPFOG00000024523
I
0.663
PXEA_0001255201
Protopolystoma xenopodis
PXEA_0001255201
I
0.663
OTP
Pteropus vampyrus
ENSPVAG00000011630
I
0.660
AMEC003288
Anopheles melas
AMEC003288
N
0.659
ENSOARG00000018096
Ovis aries
ENSOARG00000018096
I
0.657
ENSGGOG00000027271
Gorilla gorilla
ENSGGOG00000027271
I
0.657
NEMVEDRAFT_v1g93991
Nematostella vectensis
NEMVEDRAFT_v1g93991
I
0.656
L893_g26530
Steinernema glaseri
L893_g26530
I
0.650
HOXC4
Procavia capensis
ENSPCAG00000011039
I
0.649
PEQ_0000006101
Parascaris equorum
PEQ_0000006101
N
0.647
augustus_masked-nMf.1.1.scaf12078-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf12078-processed-gene-0.0
I
0.646
MNX1
Homo sapiens
ENSG00000130675
D
0.645
BTMF_0000584401
Brugia timori
BTMF_0000584401
I
0.644
nAv.1.0.1.g03166
Acanthocheilonema viteae
nAv.1.0.1.g03166
I
0.644
PEQ_0001172001
Parascaris equorum
PEQ_0001172001
I
0.644
AQUA001638
Anopheles quadriannulatus
AQUA001638
I
0.640
CLEC000966
Cimex lectularius
CLEC000966
N
0.640
AARA006634
Anopheles arabiensis
AARA006634
I
0.640
AGAP003574
Anopheles gambiae
AGAP003574
I
0.640
ACOM028612
Anopheles coluzzii
ACOM028612
I
0.640
TriadG9178
Trichoplax adhaerens
TriadG9178
N
0.638
ASIS018158
Anopheles sinensis
ASIS018158
N
0.632
LOAG_17577
Loa loa
LOAG_17577
N
0.627
MCINX000309
Melitaea cinxia
MCINX000309
I
0.625
SCUD_0001719701
Schistosoma curassoni
SCUD_0001719701
I
0.624
Smp_165410
Schistosoma mansoni
Smp_165410
I
0.624
ALUE_0001238401
Ascaris lumbricoides
ALUE_0001238401
I
0.623
ASIM_0001502101
Anisakis simplex
ASIM_0001502101
I
0.623
Hba_17613
Heterorhabditis bacteriophora
Hba_17613
I
0.621
ENSPANG00000025837
Papio anubis
ENSPANG00000025837
I
0.620
BGIBMGA010035
Bombyx mori
BGIBMGA010035
N
0.618
PEQ_0000070601
Parascaris equorum
PEQ_0000070601
N
0.614
OFLC_0001568801
Onchocerca flexuosa
OFLC_0001568801
I
0.612
CapteG71005
Capitella teleta
CapteG71005
N
0.611
ENSCING00000017406
Ciona intestinalis
ENSCING00000017406
I
0.611
estExt_fgenesh2_kg.C_2600002
Branchiostoma floridae
estExt_fgenesh2_kg.C_2600002
I
0.610
Minc03173
Meloidogyne incognita
Minc03173
I
0.609
maker-nMf.1.1.scaf04426-augustus-gene-0.4
Meloidogyne floridensis
maker-nMf.1.1.scaf04426-augustus-gene-0.4
I
0.609
ACEP17614
Atta cephalotes
ACEP17614
I
0.608
Cflo_10805--XP_001120749.1_APIME
Camponotus floridanus
Cflo_10805--XP_001120749.1_APIME
I
0.608
ENSCSAVG00000008736
Ciona savignyi
ENSCSAVG00000008736
I
0.607
AGAP010279
Anopheles gambiae
AGAP010279
I
0.606
AMEM013622
Anopheles merus
AMEM013622
I
0.606
AMEC018849
Anopheles melas
AMEC018849
I
0.606
GB49029
Apis mellifera
GB49029
I
0.606
eve
Drosophila virilis
FBgn0040404
I
0.606
ACUA014477
Anopheles culicifacies
ACUA014477
I
0.606
eve
Drosophila willistoni
FBgn0064268
I
0.606
GF11297
Drosophila ananassae
FBgn0088337
I
0.606
GI20020
Drosophila mojavensis
FBgn0142756
I
0.606
AFUN003165
Anopheles funestus
AFUN003165
I
0.606
ADIR004092
Anopheles dirus
ADIR004092
I
0.606
ACHR003168
Anopheles christyi
ACHR003168
I
0.606
AATE002315
Anopheles atroparvus
AATE002315
I
0.606
MDOA013017
Musca domestica
MDOA013017
I
0.606
PHUM236390
Pediculus humanus
PHUM236390
I
0.606
ASTEI09848
Anopheles stephensi
ASTEI09848
I
0.606
AMIN001113
Anopheles minimus
AMIN001113
I
0.606
AQUA006089
Anopheles quadriannulatus
AQUA006089
I
0.606
ACOM022636
Anopheles coluzzii
ACOM022636
I
0.606
ASIS007201
Anopheles sinensis
ASIS007201
I
0.606
AFAF012901
Anopheles farauti
AFAF012901
I
0.606
AARA007205
Anopheles arabiensis
AARA007205
I
0.606
CPIJ013533
Culex quinquefasciatus
CPIJ013533
I
0.606
AMAM005451
Anopheles maculatus
AMAM005451
I
0.606
AEPI008972
Anopheles epiroticus
AEPI008972
I
0.606
CpipJ_CPIJ013533
Culex pipiens
CpipJ_CPIJ013533
I
0.606
AALB002934
Anopheles albimanus
AALB002934
I
0.606
AAEL007369
Aedes aegypti
AAEL007369
I
0.606
TC009469
Tribolium castaneum
TC009469
I
0.605
GM21172
Drosophila sechellia
FBgn0176053
I
0.605
eve
Drosophila melanogaster
FBgn0000606
D
0.605
L798_13588
Zootermopsis nevadensis
L798_13588
I
0.605
eve
Drosophila grimshawi
FBgn0015087
I
0.605
eve
Drosophila yakuba
FBgn0024766
I
0.605
GL16768
Drosophila persimilis
FBgn0154372
I
0.605
eve
Drosophila pseudoobscura
FBgn0020474
I
0.605
eve
Drosophila erecta
FBgn0024802
I
0.605
MESCA010857
Megaselia scalaris
MESCA010857
I
0.604
LCUP005140
Lucilia cuprina
LCUP005140
I
0.604
CLEC004158
Cimex lectularius
CLEC004158
I
0.603
HHAL000607-PA
Halyomorpha halys
HHAL000607-PA
I
0.603
KGM_21124
Danaus plexippus
KGM_21124
I
0.603
HMEL011193
Heliconius melpomene
HMEL011193
I
0.603
DAPPUDRAFT_347542
Daphnia pulex
DAPPUDRAFT_347542
I
0.603
HelroG109728
Helobdella robusta
HelroG109728
I
0.603
CGI_10013056
Crassostrea gigas
CGI_10013056
I
0.600