CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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estExt_fgenesh1_pg.C_50124
(
Cochliobolus heterostrophus C5
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
estExt_fgenesh1_pg.C_50124
T227343_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NCU09556
M02226_2.00
Neurospora crassa
TTAATWTA
TAWATTAA
PBM
Weirauch et al.(2014)
pTH8955
0.840
0.912
Q0UJ27_PHANO_CONSTRUCT
M02202_2.00
PBM CONSTRUCTS
NYAATHWNN
NNWDATTRN
PBM
Weirauch et al.(2014)
pTH6773
0.802
0.965
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh1_pg.C_50124
Homeodomain
126
183
KMKRFRLTHNQTRFLMSEFARQAHPDAAHRERLAREIPGLSPRQVQVWFQNRRAKLKR
Links
Other
Homeodomain
family TFs
Other
Cochliobolus heterostrophus C5
TFs
106 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Aquca_009_00954
Aquilegia coerulea
Aquca_009_00954
N
0.000
BGIOSGA010017
Oryza indica
BGIOSGA010017
N
0.000
BRADI4G43680
Brachypodium distachyon
BRADI4G43680
N
0.000
Ciclev10011141m.g
Citrus clementina
Ciclev10011141m.g
N
0.000
Ciclev10030787m.g
Citrus clementina
Ciclev10030787m.g
N
0.000
F775_08186
Aegilops tauschii
F775_08186
N
0.000
gene18433-v1.0-hybrid
Fragaria vesca
gene18433-v1.0-hybrid
N
0.000
Gorai.011G266200
Gossypium raimondii
Gorai.011G266200
N
0.000
GRMZM2G049159
Zea mays
GRMZM2G049159
N
0.000
GRMZM2G098784
Zea mays
GRMZM2G098784
N
0.000
LPERR03G24920
Leersia perrieri
LPERR03G24920
N
0.000
MLOC_73193
Hordeum vulgare
MLOC_73193
N
0.000
OB03G37330
Oryza brachyantha
OB03G37330
N
0.000
OBART03G30260
Oryza barthii
OBART03G30260
N
0.000
OLONG_013585
Oryza longistaminata
OLONG_013585
N
0.000
OMERI03G26460
Oryza meridionalis
OMERI03G26460
N
0.000
ONIVA03G31510
Oryza nivara
ONIVA03G31510
N
0.000
OPUNC03G27510
Oryza punctata
OPUNC03G27510
N
0.000
orange1.1g004488m.g
Citrus sinensis
orange1.1g004488m.g
N
0.000
orange1.1g004514m.g
Citrus sinensis
orange1.1g004514m.g
N
0.000
ORGLA03G0287000
Oryza glaberrima
ORGLA03G0287000
N
0.000
ORUFI03G31480
Oryza rufipogon
ORUFI03G31480
N
0.000
OS03G0690600
Oryza sativa
OS03G0690600
N
0.000
Pavir.Ia03770
Panicum virgatum
Pavir.Ia03770
N
0.000
Pavir.J32327
Panicum virgatum
Pavir.J32327
N
0.000
PGSC0003DMG400019200
Solanum tuberosum
PGSC0003DMG400019200
N
0.000
Pm002685
Prunus mume
Pm002685
N
0.000
POPTR_0006s08690
Populus trichocarpa
POPTR_0006s08690
N
0.000
PRUPE_ppa001883mg
Prunus persica
PRUPE_ppa001883mg
N
0.000
Sb01g039670
Sorghum bicolor
Sb01g039670
N
0.000
Si034417m.g
Setaria italica
Si034417m.g
N
0.000
TCM_021920
Theobroma cacao
TCM_021920
N
0.000
Traes_4DS_050789E2A
Triticum aestivum
Traes_4DS_050789E2A
N
0.000
Traes_5BL_C8BEC527F
Triticum aestivum
Traes_5BL_C8BEC527F
N
0.000
Traes_5DL_8FD0CF6B9
Triticum aestivum
Traes_5DL_8FD0CF6B9
N
0.000
Traes_5DL_E275797CE
Triticum aestivum
Traes_5DL_E275797CE
N
0.000
VIT_08s0007g00510
Vitis vinifera
VIT_08s0007g00510
N
0.000