CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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estExt_fgenesh1_pg.C_60239
(
Cochliobolus heterostrophus C5
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
estExt_fgenesh1_pg.C_60239
T227344_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HESX1
M03187_2.00
Homo sapiens
NHTAATTRVH
DBYAATTADN
SELEX
Jolma et al.(2013)
HESX1_1
0.626
0.268
HESX1
M03188_2.00
Homo sapiens
NTAATTRGYAATTAD
HTAATTRCYAATTAN
SELEX
Jolma et al.(2013)
HESX1_2
0.626
0.268
HESX1
M05227_2.00
Homo sapiens
DYAATTRV
BYAATTRH
SELEX
Yin et al.(2017)
HESX1_FL_HT-SELEX
0.626
0.268
HESX1
M05228_2.00
Homo sapiens
NYAATTRD
HYAATTRN
SELEX
Yin et al.(2017)
HESX1_FL_Methyl-HT-SELEX
0.626
0.268
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh1_pg.C_60239
Homeodomain
22
48
VKPRLTKDQHDILEQHFLAQHKPSTNN
estExt_fgenesh1_pg.C_60239
Homeodomain
46
59
TNNWFQNRRAKVKQ
Links
Other
Homeodomain
family TFs
Other
Cochliobolus heterostrophus C5
TFs
18 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
COCC4DRAFT_69376
Bipolaris maydis
COCC4DRAFT_69376
I
0.867
SNOG_06729
Stagonospora nodorum
SNOG_06729
N
0.793
SNOG_06729
Phaeosphaeria nodorum
SNOG_06729
N
0.783
MCINX007054
Melitaea cinxia
MCINX007054
I
0.665
Eucgr.H02817
Eucalyptus grandis
Eucgr.H02817
I
0.640
BGIBMGA003233
Bombyx mori
BGIBMGA003233
I
0.634
NBR_0000705501
Nippostrongylus brasiliensis
NBR_0000705501
I
0.633
MCINX008871
Melitaea cinxia
MCINX008871
I
0.633
PRRX2
Cavia porcellus
ENSCPOG00000021821
I
0.626
Aan_R011917
Calypte anna
Aan_R011917
I
0.626
HESX1
Homo sapiens
ENSG00000163666
D
0.626
ENSP00000360811-D1
Bos grunniens
ENSP00000360811-D1
I
0.622
HPBE_0000873701
Heligmosomoides bakeri
HPBE_0000873701
I
0.620
ONIVA08G19230
Oryza nivara
ONIVA08G19230
N
0.610
OMERI08G14040
Oryza meridionalis
OMERI08G14040
I
0.606
OPUNC09G10660
Oryza punctata
OPUNC09G10660
I
0.606
TRIUR3_27997
Triticum urartu
TRIUR3_27997
N
0.605
PGSC0003DMG400021423
Solanum tuberosum
PGSC0003DMG400021423
I
0.600