fgenesh1_pg.scaffold_15000027 (Physcomitrella patens)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 fgenesh1_pg.scaffold_15000027 T227478_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.637 0.714
PK25011.1
M01253_2.00 		Cannabis sativa
NNWYRMDBNN
NNVHKYRWNN		 PBM
Lambert et al.(2019)
pTH11258 		0.625 0.536
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.scaffold_15000027 Homeodomain 313 368

Links

Other Homeodomain family TFs
Other Physcomitrella patens TFs

Invalid Input OrderBy

119 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action