fgenesh1_pm.chr_4_#_82 (Ostreococcus RCC809)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 fgenesh1_pm.chr_4_#_82 T227489_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
KNOX3_HORVU
M10790_2.00
Hordeum vulgare Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$KNOX3_01
0.689 0.545
KNAT6
M02037_2.00
Arabidopsis thaliana
NNWGACNNNN

NNNNGTCWNN
PBM
Weirauch et al.(2014)
pTH7296
0.689 0.527
GRMZM2G087741
M02138_2.00
Zea mays
NNTGACRKCN

NGMYGTCANN
PBM
Weirauch et al.(2014)
pTH5816
0.657 0.564
GRMZM2G135447
M02139_2.00
Zea mays
DTGACRKS

SMYGTCAH
PBM
Weirauch et al.(2014)
pTH6328
0.657 0.527
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.chr_4_#_82 Homeodomain 238 295

Links

Other Homeodomain family TFs
Other Ostreococcus RCC809 TFs

Invalid Input OrderBy

320 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action