fgenesh2_pg.scaffold_134000014 (Branchiostoma floridae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 fgenesh2_pg.scaffold_134000014 T227506_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CG34031
M02126_2.00 		Drosophila melanogaster
NNNDNNRN
NYNNHNNN		 PBM
Weirauch et al.(2014)
pTH6447 		0.630 0.737
CG34031
M06548_2.00 		Drosophila melanogaster
TTAATWG
CWATTAA		 B1H
Mathelier et al.(2014)
MA0444.1 		0.630 0.737
CG34031
M06372_2.00 		Drosophila melanogaster
BTTAATWG
CWATTAAV		 B1H
Zhu et al.(2011)
CG34031_Cell_FBgn0054031 		0.630 0.737
CG34031
M06373_2.00 		Drosophila melanogaster
NTTAATDR
YHATTAAN		 B1H
Zhu et al.(2011)
CG34031_SOLEXA_FBgn0054031 		0.630 0.737
ceh-19
M02180_2.00 		Caenorhabditis elegans
NTWAWDRNN
NNYHWTWAN		 PBM
Weirauch et al.(2014)
pTH5661 		0.617 0.614
Nkx1-1
M00442_2.00 		Mus musculus
NNTAATNDNN
NNHNATTANN		 PBM
Berger et al.(2008)
Nkx1-1_3856 		0.609 0.596
slou
M00557_2.00 		Drosophila melanogaster
NNTAATDRN
NYHATTANN		 PBM
Busser et al.(2012a)
Slou 		0.609 0.596
slou
M03798_2.00 		Drosophila melanogaster
VBTAATTRSB
VSYAATTAVB		 SELEX
Nitta et al.(2015)
slou_1 		0.609 0.596
slou
M06494_2.00 		Drosophila melanogaster
YTAATKR
YMATTAR		 B1H
Mathelier et al.(2014)
MA0245.1 		0.609 0.596
slou
M06262_2.00 		Drosophila melanogaster
BYTAATKR
YMATTARV		 B1H
Zhu et al.(2011)
Slou_Cell_FBgn0002941 		0.609 0.596
slou
M06263_2.00 		Drosophila melanogaster
HTAATKR
YMATTAD		 B1H
Zhu et al.(2011)
Slou_SOLEXA_FBgn0002941 		0.609 0.596
Nkx1-2
M00503_2.00 		Mus musculus
NNTAAWNDN
NHNWTTANN		 PBM
Berger et al.(2008)
Nkx1-2_3214 		0.608 0.579
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_134000014 Homeodomain 115 171

Links

Other Homeodomain family TFs
Other Branchiostoma floridae TFs

Invalid Input OrderBy

216 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action