fgenesh2_pg.scaffold_222000058 (Branchiostoma floridae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 fgenesh2_pg.scaffold_222000058 T227524_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Dbx1
M00451_2.00 		Mus musculus
WTTAATTA
TAATTAAW		 PBM
Berger et al.(2008)
Dbx1_3486 		0.867 0.893
Dbx2
M00499_2.00 		Mus musculus
NNDTNNN
NNNAHNN		 PBM
Berger et al.(2008)
Dbx2_3487 		0.830 0.875
Dbx
M02128_2.00 		Drosophila melanogaster
WTTAATTA
TAATTAAW		 PBM
Weirauch et al.(2014)
pTH6051 		0.818 0.857
Dbx
M06550_2.00 		Drosophila melanogaster
TTWATKA
TMATWAA		 B1H
Mathelier et al.(2014)
MA0174.1 		0.818 0.857
Hlx
M00485_2.00 		Mus musculus
NNNAWND
HNWTNNN		 PBM
Berger et al.(2008)
Hlx1_2350 		0.733 0.661
H2.0
M06489_2.00 		Drosophila melanogaster
WTWATDA
THATWAW		 B1H
Mathelier et al.(2014)
MA0448.1 		0.732 0.696
H2.0
M06250_2.00 		Drosophila melanogaster
TWWWWDA
THAWWWA		 B1H
Zhu et al.(2011)
H2.0_Cell_FBgn0001170 		0.732 0.696
H2.0
M06251_2.00 		Drosophila melanogaster
WTWATTRN
NYAATWAW		 B1H
Zhu et al.(2011)
H2.0_SOLEXA_FBgn0001170 		0.732 0.696
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_222000058 Homeodomain 187 242

Links

Other Homeodomain family TFs
Other Branchiostoma floridae TFs

Invalid Input OrderBy

270 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action