fgenesh2_pg.scaffold_23000163 (Branchiostoma floridae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 fgenesh2_pg.scaffold_23000163 T227528_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HESX1
M03187_2.00
Homo sapiens
NHTAATTRVH

DBYAATTADN
SELEX
Jolma et al.(2013)
HESX1_1
0.693 0.188
HESX1
M03188_2.00
Homo sapiens
NTAATTRGYAATTAD

HTAATTRCYAATTAN
SELEX
Jolma et al.(2013)
HESX1_2
0.693 0.188
HESX1
M05227_2.00
Homo sapiens
DYAATTRV

BYAATTRH
SELEX
Yin et al.(2017)
HESX1_FL_HT-SELEX
0.693 0.188
HESX1
M05228_2.00
Homo sapiens
NYAATTRD

HYAATTRN
SELEX
Yin et al.(2017)
HESX1_FL_Methyl-HT-SELEX
0.693 0.188
NOBOX
M09135_2.00
Homo sapiens
HTAATTRVB

VBYAATTAD
Misc
Kulakovskiy et al.(2013)
NOBOX_HUMAN.H11MO.0.C
0.656 0.329
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_23000163 Homeodomain 120 153
fgenesh2_pg.scaffold_23000163 Homeodomain 155 205

Links

Other Homeodomain family TFs
Other Branchiostoma floridae TFs

120 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R011917 Calypte anna Aan_R011917 I 0.735
ACUA004306 Anopheles culicifacies ACUA004306 I 0.631
ACUA026833 Anopheles culicifacies ACUA026833 I 0.656
ADAC001468 Anopheles darlingi ADAC001468 I 0.677
ADAC008104 Anopheles darlingi ADAC008104 I 0.701
Alligator_sinensis_CCG014496.1 Alligator sinensis Alligator_sinensis_CCG014496.1 I 0.673
ALUE_0000848601 Ascaris lumbricoides ALUE_0000848601 I 0.675
ALUE_0001497801 Ascaris lumbricoides ALUE_0001497801 I 0.639
AMAM000848 Anopheles maculatus AMAM000848 I 0.656
ANCCAN_10593 Ancylostoma caninum ANCCAN_10593 I 0.608
ASIM_0001230001 Anisakis simplex ASIM_0001230001 I 0.642
BGIBMGA003233 Bombyx mori BGIBMGA003233 I 0.629
BGLB004491 Biomphalaria glabrata BGLB004491 I 0.648
BGLB009977 Biomphalaria glabrata BGLB009977 I 0.619
BGLB013824 Biomphalaria glabrata BGLB013824 I 0.682
BGLB014161 Biomphalaria glabrata BGLB014161 I 0.622
Cflo_02794--XP_001120105.1_APIME Camponotus floridanus Cflo_02794--XP_001120105.1_APIME I 0.688
Cflo_04174--XP_001120833.1_APIME Camponotus floridanus Cflo_04174--XP_001120833.1_APIME I 0.662
CGI_10009720 Crassostrea gigas CGI_10009720 I 0.628
CGI_10016653 Crassostrea gigas CGI_10016653 I 0.641
CLEC007171 Cimex lectularius CLEC007171 I 0.639
Cmyd_10001740 Chelonia mydas Cmyd_10001740 I 0.642
Cmyd_10012400 Chelonia mydas Cmyd_10012400 I 0.604
D917_01051 Trichinella nativa D917_01051 I 0.616
DICVIV_02647 Dictyocaulus viviparus DICVIV_02647 I 0.683
DLX3 Bos taurus ENSBTAG00000017409 I 0.637
DLX4 Oryctolagus cuniculus ENSOCUG00000022067 I 0.619
DLX4 Bos taurus ENSBTAG00000007353 I 0.629
DLX4 Myotis lucifugus ENSMLUG00000007268 I 0.617
drgx Takifugu rubripes ENSTRUG00000013446 I 0.696
ECANG7_01330 Echinococcus canadensis ECANG7_01330 I 0.601
EEL_0000220001 Elaeophora elaphi EEL_0000220001 I 0.630
EFV55592 Trichinella spiralis EFV55592 I 0.688
EFV57629 Trichinella spiralis EFV57629 I 0.616
ENSACAG00000002147 Anolis carolinensis ENSACAG00000002147 I 0.653
ENSAMEG00000004942 Ailuropoda melanoleuca ENSAMEG00000004942 I 0.665
ENSBTAP00000009672-D1 Bos grunniens ENSBTAP00000009672-D1 I 0.629
ENSBTAP00000049813-D5 Bos grunniens ENSBTAP00000049813-D5 I 0.626
ENSCSAG00000007090 Chlorocebus sabaeus ENSCSAG00000007090 I 0.656
ENSCSAVG00000000940 Ciona savignyi ENSCSAVG00000000940 I 0.713
ENSFCAG00000029037 Felis catus ENSFCAG00000029037 I 0.614
ENSLACG00000001487 Latimeria chalumnae ENSLACG00000001487 I 0.639
ENSMGAG00000013900 Meleagris gallopavo ENSMGAG00000013900 I 0.630
ENSMMUP00000027138 Macaca fascicularis ENSMMUP00000027138 I 0.656
ENSMODG00000001675 Monodelphis domestica ENSMODG00000001675 I 0.682
ENSMPUG00000007079 Mustela putorius furo ENSMPUG00000007079 I 0.656
ENSNLEG00000003406 Nomascus leucogenys ENSNLEG00000003406 I 0.656
ENSOARG00000005572 Ovis aries ENSOARG00000005572 I 0.629
ENSP00000360811-D1 Bos grunniens ENSP00000360811-D1 I 0.716
ENSP00000419457-D1 Bos grunniens ENSP00000419457-D1 I 0.672
ENSPANG00000018829 Papio anubis ENSPANG00000018829 I 0.656
ENSPSIG00000014030 Pelodiscus sinensis ENSPSIG00000014030 I 0.658
ENSSTOG00000026570 Ictidomys tridecemlineatus ENSSTOG00000026570 I 0.654
ENSTSYG00000014450 Tarsius syrichta ENSTSYG00000014450 I 0.647
EVEC_0000357701 Enterobius vermicularis EVEC_0000357701 I 0.687
GF12207 Drosophila ananassae FBgn0089246 I 0.704
GF13343 Drosophila ananassae FBgn0090375 I 0.616
Gfo_R002825 Geospiza fortis Gfo_R002825 I 0.652
GK22877 Drosophila willistoni FBgn0224839 I 0.671
HCOI01026600 Haemonchus contortus HCOI01026600 I 0.653
HelroG173001 Helobdella robusta HelroG173001 I 0.647
HESX1 Homo sapiens ENSG00000163666 D 0.693
HMEL006244 Heliconius melpomene HMEL006244 I 0.665
HMEL016421 Heliconius melpomene HMEL016421 I 0.628
HPBE_0000873701 Heligmosomoides bakeri HPBE_0000873701 I 0.709
HPLM_0000971301 Haemonchus placei HPLM_0000971301 I 0.623
L596_g8967 Steinernema carpocapsae L596_g8967 I 0.617
L798_06393 Zootermopsis nevadensis L798_06393 I 0.655
L892_g24303 Steinernema scapterisci L892_g24303 I 0.704
LDEC008146 Leptinotarsa decemlineata LDEC008146 I 0.681
LHX6 Gorilla gorilla ENSGGOG00000008310 I 0.702
lhx8b Takifugu rubripes ENSTRUG00000017607 I 0.722
LLOJ008398 Lutzomyia longipalpis LLOJ008398 N 0.610
MCINX007054 Melitaea cinxia MCINX007054 I 0.711
MCINX008871 Melitaea cinxia MCINX008871 I 0.750
MCOS_0000004601 Mesocestoides corti MCOS_0000004601 I 0.673
meox1 Takifugu rubripes ENSTRUG00000005193 I 0.642
Myotis_brandtii_NOBOX_10026198 Myotis brandtii Myotis_brandtii_NOBOX_10026198 I 0.656
NBR_0000705501 Nippostrongylus brasiliensis NBR_0000705501 I 0.719
NECAME_16530 Necator americanus NECAME_16530 I 0.607
NEMVEDRAFT_v1g198584 Nematostella vectensis NEMVEDRAFT_v1g198584 I 0.694
nLs.2.1.2.g05836 Litomosoides sigmodontis nLs.2.1.2.g05836 I 0.617
NOBOX Homo sapiens ENSG00000106410 D 0.656
NOBOX Callithrix jacchus ENSCJAG00000009917 I 0.656
NOBOX Felis catus ENSFCAG00000004352 I 0.656
NOBOX Equus caballus ENSECAG00000003123 I 0.656
NOBOX Canis familiaris ENSCAFG00000003500 I 0.672
NOBOX Oryctolagus cuniculus ENSOCUG00000001027 I 0.656
NOBOX Gorilla gorilla ENSGGOG00000022185 I 0.656
NOBOX Myotis lucifugus ENSMLUG00000004209 I 0.656
NOBOX Macaca mulatta ENSMMUG00000020609 I 0.656
NOBOX Pan troglodytes ENSPTRG00000019828 I 0.656
NOBOX Otolemur garnettii ENSOGAG00000010413 I 0.656
nRc.2.0.1.g34428 Romanomermis culicivorax nRc.2.0.1.g34428 I 0.688
nRc.2.0.1.g35501 Romanomermis culicivorax nRc.2.0.1.g35501 I 0.642
OESDEN_01216 Oesophagostomum dentatum OESDEN_01216 I 0.716
Ogr03859 Ophisaurus gracilis Ogr03859 I 0.665
Ogr09065 Ophisaurus gracilis Ogr09065 I 0.695
PEQ_0001069001 Parascaris equorum PEQ_0001069001 I 0.613
PEQ_0001388201 Parascaris equorum PEQ_0001388201 I 0.674
PPAI007004 Phlebotomus papatasi PPAI007004 I 0.714
PRRX2 Cavia porcellus ENSCPOG00000021821 I 0.730
Pvit_13361 Pogona vitticeps Pvit_13361 I 0.653
SBAD_0000602401 Soboliphyme baturini SBAD_0000602401 I 0.630
SINV13346 Solenopsis invicta SINV13346 I 0.604
SNAPOd2T00016706001 Oikopleura dioica SNAPOd2T00016706001 I 0.679
SPU_004366 Strongylocentrotus purpuratus SPU_004366 I 0.694
SSLN_0001460801 Schistocephalus solidus SSLN_0001460801 I 0.614
SVUK_0001056001 Strongylus vulgaris SVUK_0001056001 I 0.711
T265_14002 Opisthorchis viverrini T265_14002 I 0.609
TC000483 Tribolium castaneum TC000483 I 0.640
TCNE_0000653501 Toxocara canis TCNE_0000653501 I 0.717
TELCIR_07728 Teladorsagia circumcincta TELCIR_07728 I 0.646
TELCIR_10796 Teladorsagia circumcincta TELCIR_10796 I 0.653
tetur02g13510 Tetranychus urticae tetur02g13510 I 0.662
tetur14g02510 Tetranychus urticae tetur14g02510 I 0.707
TTAC_0000027101 Hydatigera taeniaeformis TTAC_0000027101 I 0.615
TTAC_0001021101 Hydatigera taeniaeformis TTAC_0001021101 N 0.615
TTRE_0000072001 Trichuris trichiura TTRE_0000072001 I 0.715
YQE_10100 Dendroctonus ponderosae YQE_10100 I 0.647