CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh2_pg.scaffold_505000025
(
Branchiostoma floridae
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
fgenesh2_pg.scaffold_505000025
T227541_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Hmbox1
M00419_2.00
Mus musculus
NNNGWNNN
NNNWCNNN
PBM
Berger et al.(2008)
Hmbox1_2674
0.718
0.684
HMBOX1
M03167_2.00
Homo sapiens
BKTAACTARB
VYTAGTTAMV
SELEX
Jolma et al.(2013)
HMBOX1_1
0.718
0.684
HMBOX1
M05180_2.00
Homo sapiens
BTAACYAGB
VCTRGTTAV
SELEX
Yin et al.(2017)
HMBOX1_eDBD_HT-SELEX
0.718
0.684
HMBOX1
M05181_2.00
Homo sapiens
NTAACTAGB
VCTAGTTAN
SELEX
Yin et al.(2017)
HMBOX1_eDBD_Methyl-HT-SELEX
0.718
0.684
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_pg.scaffold_505000025
Homeodomain
312
383
RGHRFNWPEACITIMEKYFEENQYPDEKKREEITNACNSVIQKPGVELPAQMLVNSARVYNWFANRRKDVKR
Links
Other
Homeodomain
family TFs
Other
Branchiostoma floridae
TFs
83 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
hmbox1a
Oryzias latipes
ENSORLG00000014467
I
0.775
hmbox1a
Takifugu rubripes
ENSTRUG00000006366
I
0.770
ENSXMAG00000011675
Xiphophorus maculatus
ENSXMAG00000011675
I
0.770
hmbox1a
Gasterosteus aculeatus
ENSGACG00000014814
I
0.770
ENSPFOG00000017886
Poecilia formosa
ENSPFOG00000017886
I
0.770
ENSONIG00000003040
Oreochromis niloticus
ENSONIG00000003040
I
0.770
Q4S8E1_TETNG
Tetraodon nigroviridis
Q4S8E1_TETNG
I
0.770
hmbox1a
Tetraodon nigroviridis
ENSTNIG00000011904
I
0.770
ENSCSAVG00000002486
Ciona savignyi
ENSCSAVG00000002486
I
0.737
ENSCING00000003920
Ciona intestinalis
ENSCING00000003920
I
0.737
ENSPANG00000014537
Papio anubis
ENSPANG00000014537
I
0.718
HMBOX1
Procavia capensis
ENSPCAG00000012005
I
0.718
Gfo_R008926
Geospiza fortis
Gfo_R008926
I
0.718
ENSPPYG00000018480
Pongo abelii
ENSPPYG00000018480
I
0.718
ENSPSIG00000016826
Pelodiscus sinensis
ENSPSIG00000016826
I
0.718
Myotis_brandtii_HMBOX1_10012332
Myotis brandtii
Myotis_brandtii_HMBOX1_10012332
I
0.718
hmbox1.S
Xenopus laevis
XB-GENE-6078482
I
0.718
ENSNLEG00000016701
Nomascus leucogenys
ENSNLEG00000016701
I
0.718
Hmbox1
Mus musculus
ENSMUSG00000021972
D
0.718
ENSOARG00000015036
Ovis aries
ENSOARG00000015036
I
0.718
HMBOX1
Anolis carolinensis
ENSACAG00000010160
I
0.718
HMBOX1
Otolemur garnettii
ENSOGAG00000001381
I
0.718
ENSP00000401769
Macaca fascicularis
ENSP00000401769
I
0.718
Hmbox1
Rattus norvegicus
ENSRNOG00000013326
I
0.718
Cmyd_10005786
Chelonia mydas
Cmyd_10005786
I
0.718
HMBOX1
Tursiops truncatus
ENSTTRG00000015467
I
0.718
Brh_R012838
Buceros rhinoceros
Brh_R012838
I
0.718
Aan_R010756
Calypte anna
Aan_R010756
I
0.718
Afo_R011837
Aptenodytes forsteri
Afo_R011837
I
0.718
ENSTSYG00000001109
Tarsius syrichta
ENSTSYG00000001109
I
0.718
ENSP00000401769-D1
Bos grunniens
ENSP00000401769-D1
I
0.718
ENSSHAG00000016211
Sarcophilus harrisii
ENSSHAG00000016211
I
0.718
HMBOX1
Sus scrofa
ENSSSCG00000009682
I
0.718
HMBOX1
Taeniopygia guttata
ENSTGUG00000013324
I
0.718
ENSMPUG00000001070
Mustela putorius furo
ENSMPUG00000001070
I
0.718
HMBOX1
Pan troglodytes
ENSPTRG00000020127
I
0.718
HMBOX1
Oryctolagus cuniculus
ENSOCUG00000017211
I
0.718
HMBOX1
Equus caballus
ENSECAG00000008240
I
0.718
HMBOX1
Dasypus novemcinctus
ENSDNOG00000031840
I
0.718
ENSFALG00000010859
Ficedula albicollis
ENSFALG00000010859
I
0.718
HMBOX1
Monodelphis domestica
ENSMODG00000008788
I
0.718
HMBOX1
Gallus gallus
ENSGALG00000016633
I
0.718
HMBOX1
Homo sapiens
ENSG00000147421
D
0.718
ENSCSAG00000015894
Chlorocebus sabaeus
ENSCSAG00000015894
I
0.718
HMBOX1
Callithrix jacchus
ENSCJAG00000015654
I
0.718
ENSAPLG00000006003
Anas platyrhynchos
ENSAPLG00000006003
I
0.718
ENSAMEG00000016028
Ailuropoda melanoleuca
ENSAMEG00000016028
I
0.718
HMBOX1
Bos taurus
ENSBTAG00000010819
I
0.718
HMBOX1
Canis familiaris
ENSCAFG00000008237
I
0.718
HMBOX1
Choloepus hoffmanni
ENSCHOG00000005538
I
0.718
HMBOX1
Gorilla gorilla
ENSGGOG00000000860
I
0.718
HMBOX1
Felis catus
ENSFCAG00000022672
I
0.718
ENSMEUG00000015023
Macropus eugenii
ENSMEUG00000015023
I
0.718
HMBOX1
Loxodonta africana
ENSLAFG00000032318
I
0.718
HMBOX1
Myotis lucifugus
ENSMLUG00000007478
I
0.718
ENSLOCG00000015994
Lepisosteus oculatus
ENSLOCG00000015994
I
0.718
HMBOX1
Macaca mulatta
ENSMMUG00000014981
I
0.718
hmbox1b
Danio rerio
ENSDARG00000018913
I
0.714
ENSXMAG00000001795
Xiphophorus maculatus
ENSXMAG00000001795
I
0.714
HMBOX1
Cavia porcellus
ENSCPOG00000011124
I
0.714
hmbox1b
Takifugu rubripes
ENSTRUG00000004378
I
0.714
ENSONIG00000001328
Oreochromis niloticus
ENSONIG00000001328
I
0.714
ENSAMXG00000018539
Astyanax mexicanus
ENSAMXG00000018539
I
0.714
hmbox1a
Danio rerio
ENSDARG00000027082
I
0.714
hmbox1b
Gasterosteus aculeatus
ENSGACG00000004391
I
0.714
ENSPFOG00000000843
Poecilia formosa
ENSPFOG00000000843
I
0.714
hmbox1b
Oryzias latipes
ENSORLG00000016242
I
0.714
ENSGMOG00000002742
Gadus morhua
ENSGMOG00000002742
I
0.714
ENSGMOG00000006872
Gadus morhua
ENSGMOG00000006872
I
0.709
ENSLOCG00000001916
Lepisosteus oculatus
ENSLOCG00000001916
I
0.698
zgc:91944
Danio rerio
ENSDARG00000035887
I
0.698
ENSGMOG00000004622
Gadus morhua
ENSGMOG00000004622
I
0.698
zgc:91944
Takifugu rubripes
ENSTRUG00000012550
I
0.698
zgc:91944
Gasterosteus aculeatus
ENSGACG00000009223
I
0.698
zgc:91944
Oryzias latipes
ENSORLG00000020883
I
0.698
ENSLACG00000011304
Latimeria chalumnae
ENSLACG00000011304
I
0.698
ENSXMAG00000005730
Xiphophorus maculatus
ENSXMAG00000005730
I
0.698
ENSPFOG00000012263
Poecilia formosa
ENSPFOG00000012263
I
0.698
ENSAMXG00000011241
Astyanax mexicanus
ENSAMXG00000011241
I
0.698
ENSONIG00000007704
Oreochromis niloticus
ENSONIG00000007704
I
0.698
zgc:91944
Tetraodon nigroviridis
ENSTNIG00000014025
I
0.698
SPU_022737
Strongylocentrotus purpuratus
SPU_022737
I
0.642
SPU_002791
Strongylocentrotus purpuratus
SPU_002791
I
0.642