fgenesh2_pg.scaffold_63000032 (Branchiostoma floridae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 fgenesh2_pg.scaffold_63000032 T227548_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NEMVEDRAFT_v1g80394
M02151_2.00
Nematostella vectensis
NNYWATNHN

NDNATWRNN
PBM
Weirauch et al.(2014)
pTH5904
0.622 0.684
CDX1
M10761_2.00
Gallus gallus
BDBWAAK

MTTWVHV
Transfac
Matys et al.(2006)
V$CDXA_01
0.621 0.456
CDX1
M10762_2.00
Gallus gallus
WWWWMYR

YRKWAWW
Transfac
Matys et al.(2006)
V$CDXA_02
0.621 0.456
CDX4
M05129_2.00
Homo sapiens
VKTTTATKRCH

DGYMATAAAMB
SELEX
Yin et al.(2017)
CDX4_FL_HT-SELEX
0.609 0.491
Cdx4
M09197_2.00
Mus musculus
WGATTTATDRBH

DVYHATAAATCW
Misc
Kulakovskiy et al.(2013)
CDX4_MOUSE.H11MO.0.A
0.609 0.491
CDX4
M05130_2.00
Homo sapiens
BGTCGTAAAHN

NDTTTACGACV
SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_1
0.609 0.491
CDX4
M05131_2.00
Homo sapiens
VKTTTATKGCN

NGCMATAAAMB
SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_2
0.609 0.491
Cdx2
M00447_2.00
Mus musculus
NWWAYDRNN

NNYHRTWWN
PBM
Berger et al.(2008)
Cdx2_4272
0.609 0.474
Cdx2
M09193_2.00
Mus musculus
BTTTATKRCYBY

RVRGYMATAAAV
Misc
Kulakovskiy et al.(2013)
CDX2_MOUSE.H11MO.0.A
0.609 0.474
Cdx2
M09572_2.00
Mus musculus
NTTTTATKRC

GYMATAAAAN
Misc
Heinz et al.(2010)
mES-Cdx2_GSE14586
0.609 0.474
Cdx1
M00427_2.00
Mus musculus
NWWATDRNN

NNYHATWWN
PBM
Berger et al.(2008)
Cdx1_2245
0.609 0.456
CDX1
M03115_2.00
Homo sapiens
NTTTATKRB

VYMATAAAN
SELEX
Jolma et al.(2013)
CDX1_1
0.609 0.456
CDX2
M03196_2.00
Homo sapiens
KTTTATKRB

VYMATAAAM
SELEX
Jolma et al.(2013)
CDX2_1
0.609 0.456
CDX1
M05018_2.00
Homo sapiens
VKTTTATKRCN

NGYMATAAAMB
SELEX
Yin et al.(2017)
CDX1_eDBD_HT-SELEX
0.609 0.456
CDX2
M05248_2.00
Homo sapiens
NDTWAYRRYN

NRYYRTWAHN
SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_1
0.609 0.456
CDX2
M05249_2.00
Homo sapiens
NDWWATKRB

VYMATWWHN
SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_2
0.609 0.456
CDX2
M08131_2.00
Homo sapiens
YTTTATKRCHB

VDGYMATAAAR
ChIP-seq
Mathelier et al.(2014)
MA0465.1
0.609 0.456
CDX1
M09140_2.00
Homo sapiens
HCWTAAAD

HTTTAWGD
Misc
Kulakovskiy et al.(2013)
CDX1_HUMAN.H11MO.0.C
0.609 0.456
CDX2
M09152_2.00
Homo sapiens
DTTBATKGCHNB

VNDGCMATVAAH
Misc
Kulakovskiy et al.(2013)
CDX2_HUMAN.H11MO.0.A
0.609 0.456
Cdx1
M09186_2.00
Mus musculus
HCWTAAAD

HTTTAWGD
Misc
Kulakovskiy et al.(2013)
CDX1_MOUSE.H11MO.0.C
0.609 0.456
CDX1
M10670_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX1_Q4
0.609 0.456
CDX1
M10671_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX1_Q5
0.609 0.456
CDX2
M10723_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q5_01
0.609 0.456
CDX2
M10724_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q5_02
0.609 0.456
CDX2
M10725_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q5
0.609 0.456
CDX2
M10726_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q6
0.609 0.456
CDX1
M05019_2.00
Homo sapiens
NGTCGTAAAWB

VWTTTACGACN
SELEX
Yin et al.(2017)
CDX1_eDBD_Methyl-HT-SELEX
0.609 0.456
CDX2
M05250_2.00
Homo sapiens
NRTCGTAWHBNN

NNVDWTACGAYN
SELEX
Yin et al.(2017)
CDX2_eDBD_Methyl-HT-SELEX
0.609 0.456
NKX2-5
M00323_2.00
Homo sapiens
NWYAAGTGSNN

NNSCACTTRWN
PBM
Barrera et al.(2016)
NKX2-5_REF
0.604 0.474
Nkx2-5
M00404_2.00
Mus musculus
NNNRAGDRBN

NVYHCTYNNN
PBM
Berger et al.(2008)
Nkx2-5_3436
0.604 0.474
Nkx2-3
M00497_2.00
Mus musculus
NNRAGDRNN

NNYHCTYNN
PBM
Berger et al.(2008)
Nkx2-3_3435
0.604 0.474
NKX2-3
M05042_2.00
Homo sapiens
NNBAAGTGBN

NVCACTTVNN
SELEX
Yin et al.(2017)
NKX2-3_eDBD_HT-SELEX
0.604 0.474
NKX2-3
M05045_2.00
Homo sapiens
BNBAAGTGBN

NVCACTTVNV
SELEX
Yin et al.(2017)
NKX2-3_FL_HT-SELEX
0.604 0.474
NKX2-5
M05346_2.00
Homo sapiens
BHYAAGTGBN

NVCACTTRDV
SELEX
Yin et al.(2017)
NKX2-5_FL_HT-SELEX
0.604 0.474
Nkx2-5
M02686_2.00
Mus musculus
WTAAKWK

MWMTTAW
SELEX
Mathelier et al.(2014)
MA0063.1
0.604 0.474
Nkx2-5
M08136_2.00
Mus musculus
SYTGAGWGSYH

DRSCWCTCARS
ChIP-seq
Mathelier et al.(2014)
MA0503.1
0.604 0.474
NKX2-5
M09163_2.00
Homo sapiens
BKRAGWGV

BCWCTYMV
Misc
Kulakovskiy et al.(2013)
NKX25_HUMAN.H11MO.0.B
0.604 0.474
Nkx2-5
M09177_2.00
Mus musculus
NBYBRAGTGS

SCACTYVRVN
Misc
Kulakovskiy et al.(2013)
NKX25_MOUSE.H11MO.0.A
0.604 0.474
Nkx2-5
M09567_2.00
Mus musculus
HBRAGWGBNN

NNVCWCTYVD
Misc
Heinz et al.(2010)
HL1-Nkx2.5.biotin_GSE21529
0.604 0.474
NKX2-5
M10742_2.00
Homo sapiens
TYAAGTG

CACTTRA
Transfac
Matys et al.(2006)
V$NKX25_01
0.604 0.474
NKX2-5
M10743_2.00
Homo sapiens
CWTAATTV

BAATTAWG
Transfac
Matys et al.(2006)
V$NKX25_02
0.604 0.474
NKX2-5
M10744_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX25_Q5
0.604 0.474
NKX2-5
M10745_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX25_Q6
0.604 0.474
NKX2-5
M00321_2.00
Homo sapiens
HNAAGTRBNN

NNVYACTTND
PBM
Barrera et al.(2016)
NKX2-5_R161P
0.604 0.474
NKX2-5
M00324_2.00
Homo sapiens
NHNNNNN

NNNNNDN
PBM
Barrera et al.(2016)
NKX2-5_T178M
0.604 0.474
NKX2-3
M05043_2.00
Homo sapiens
BNBAAGTGBN

NVCACTTVNV
SELEX
Yin et al.(2017)
NKX2-3_eDBD_Methyl-HT-SELEX_1
0.604 0.474
NKX2-3
M05044_2.00
Homo sapiens
SDYAACGHB

VDCGTTRHS
SELEX
Yin et al.(2017)
NKX2-3_eDBD_Methyl-HT-SELEX_2
0.604 0.474
NKX2-3
M05046_2.00
Homo sapiens
BNBAAGTGBN

NVCACTTVNV
SELEX
Yin et al.(2017)
NKX2-3_FL_Methyl-HT-SELEX_1
0.604 0.474
NKX2-3
M05047_2.00
Homo sapiens
SWYAACSHB

VDSGTTRWS
SELEX
Yin et al.(2017)
NKX2-3_FL_Methyl-HT-SELEX_2
0.604 0.474
NKX2-5
M05347_2.00
Homo sapiens
BTYAAGTGGN

NCCACTTRAV
SELEX
Yin et al.(2017)
NKX2-5_FL_Methyl-HT-SELEX_1
0.604 0.474
NKX2-5
M05348_2.00
Homo sapiens
BTYAACGAB

VTCGTTRAV
SELEX
Yin et al.(2017)
NKX2-5_FL_Methyl-HT-SELEX_2
0.604 0.474
NKX2-5
M00322_2.00
Homo sapiens
NNNRNNN

NNNYNNN
PBM
Barrera et al.(2016)
NKX2-5_R190C
0.604 0.456
ceh-28
M08210_2.00
Caenorhabditis elegans
AATCGATW

WATCGATT
ChIP-seq
Contrino et al.(2012)
Mw138
0.603 0.456
tin
M00559_2.00
Drosophila melanogaster
NWYAAGTGGNN

NNCCACTTRWN
PBM
Busser et al.(2012a)
Tin
0.602 0.491
tin
M03809_2.00
Drosophila melanogaster
BTYAAGTGSN

NSCACTTRAV
SELEX
Nitta et al.(2015)
tin_1
0.602 0.491
tin
M06284_2.00
Drosophila melanogaster
BTYAAGTG

CACTTRAV
B1H
Zhu et al.(2011)
Tin_Cell_FBgn0004110
0.602 0.491
tin
M06285_2.00
Drosophila melanogaster
BCTCAAGTGSVN

NBSCACTTGAGV
B1H
Zhu et al.(2011)
tin_FlyReg_FBgn0004110
0.602 0.491
tin
M06286_2.00
Drosophila melanogaster
BWYAAGTR

YACTTRWV
B1H
Zhu et al.(2011)
Tin_SOLEXA_FBgn0004110
0.602 0.491
tin
M08421_2.00
Drosophila melanogaster
DBTCRAGTGS

SCACTYGAVH
ChIP-chip
Mathelier et al.(2014)
MA0247.2
0.602 0.491
cad
M03780_2.00
Drosophila melanogaster
NKTTTATKRCHB

VDGYMATAAAMN
SELEX
Nitta et al.(2015)
cad_1
0.601 0.439
cad
M03781_2.00
Drosophila melanogaster
NDTTTATKRCHN

NDGYMATAAAHN
SELEX
Nitta et al.(2015)
cad_2
0.601 0.439
cad
M03782_2.00
Drosophila melanogaster
NDTTTATKRCNB

VNGYMATAAAHN
SELEX
Nitta et al.(2015)
cad_3
0.601 0.439
cad
M03783_2.00
Drosophila melanogaster
NNTTTAYGRYNN

NNRYCRTAAANN
SELEX
Nitta et al.(2015)
cad_4
0.601 0.439
cad
M06223_2.00
Drosophila melanogaster
HTTWATTR

YAATWAAD
B1H
Zhu et al.(2011)
Cad_Cell_FBgn0000251
0.601 0.439
cad
M06224_2.00
Drosophila melanogaster
RBYVDAAMV

BKTTHBRVY
B1H
Zhu et al.(2011)
cad_FlyReg_FBgn0000251
0.601 0.439
cad
M06225_2.00
Drosophila melanogaster
NTTWATKR

YMATWAAN
B1H
Zhu et al.(2011)
Cad_SOLEXA_FBgn0000251
0.601 0.439
cad
M08420_2.00
Drosophila melanogaster
DTTTTATKRYY

RRYMATAAAAH
ChIP-chip
Mathelier et al.(2014)
MA0216.2
0.601 0.439
cad
M09580_2.00
Drosophila melanogaster
DTTTAYGRYN

NRYCRTAAAH
Misc
Heinz et al.(2010)
Drosophila-Embryos_modEncode
0.601 0.439
cad
M09674_2.00
Drosophila melanogaster
HTTTATKRBY

RVYMATAAAD
Misc
Kulakovskiy et al.(2009)
cad
0.601 0.439
cad
M10783_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$CAD_Q6
0.601 0.439
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_63000032 Homeodomain 188 244

Links

Other Homeodomain family TFs
Other Branchiostoma floridae TFs

Invalid Input OrderBy

513 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action