fgenesh2_pg.scaffold_750000002 (Branchiostoma floridae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 fgenesh2_pg.scaffold_750000002 T227551_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Six3
M00483_2.00
Mus musculus
NNNAYMN

NKRTNNN
PBM
Berger et al.(2008)
Six3_1732
0.867 0.982
SIX3
M05159_2.00
Homo sapiens
NNYGATABBN

NVVTATCRNN
SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX
0.867 0.982
SIX3
M10698_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX3_Q6
0.867 0.982
SIX3
M05160_2.00
Homo sapiens
NNYGATABVB

VBVTATCRNN
SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX
0.867 0.982
Optix
M02124_2.00
Drosophila melanogaster
NNNNNDATMN

NKATHNNNNN
PBM
Weirauch et al.(2014)
pTH5437
0.867 0.947
Optix
M03850_2.00
Drosophila melanogaster
TAATYTAATTA

TAATTARATTA
SELEX
Nitta et al.(2015)
Optix_1
0.867 0.947
Optix
M06526_2.00
Drosophila melanogaster
TGATA

TATCA
B1H
Mathelier et al.(2014)
MA0199.1
0.867 0.947
Optix
M06327_2.00
Drosophila melanogaster
HHVTGATA

TATCABDD
B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360
0.867 0.947
Optix
M06328_2.00
Drosophila melanogaster
NNNTGATA

TATCANNN
B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360
0.867 0.947
SIX6
M00326_2.00
Homo sapiens
NNDATMB

VKATHNN
PBM
Barrera et al.(2016)
SIX6_REF
0.865 0.965
Six6
M00169_2.00
Mus musculus
NNAYMNN

NNKRTNN
PBM
Badis et al.(2009)
Six6_2267
0.865 0.965
Six6
M00412_2.00
Mus musculus
NNNTGATAYCN

NGRTATCANNN
PBM
Berger et al.(2008)
Six6_2267
0.865 0.965
SIX6
M05357_2.00
Homo sapiens
NNYGATASVB

VBSTATCRNN
SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX
0.865 0.965
SIX6
M00325_2.00
Homo sapiens
NNNDATMB

VKATHNNN
PBM
Barrera et al.(2016)
SIX6_H141N
0.865 0.965
SIX6
M05358_2.00
Homo sapiens
VBVYAYCRNN

NNYGRTRBVB
SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX
0.865 0.965
six3
M02102_2.00
Oryzias latipes
NNDAYMBNNN

NNNVKRTHNN
PBM
Weirauch et al.(2014)
pTH5928
0.865 0.947
SIX6
M00327_2.00
Homo sapiens
NHDAYMBNN

NNVKRTHDN
PBM
Barrera et al.(2016)
SIX6_T165A
0.859 0.947
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_750000002 Homeodomain 132 188

Links

Other Homeodomain family TFs
Other Branchiostoma floridae TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AARA009355 Anopheles arabiensis AARA009355 N 0.000
ACOM031370 Anopheles coluzzii ACOM031370 N 0.000
AEPI009274 Anopheles epiroticus AEPI009274 N 0.000
Alligator_sinensis_CCG013371.1 Alligator sinensis Alligator_sinensis_CCG013371.1 N 0.000
AMEC017016 Anopheles melas AMEC017016 N 0.000
AMEM000352 Anopheles merus AMEM000352 N 0.000
AQUA001972 Anopheles quadriannulatus AQUA001972 N 0.000
Brh_R008554 Buceros rhinoceros Brh_R008554 N 0.000
Cflo_00615--XP_001121679.1_APIME Camponotus floridanus Cflo_00615--XP_001121679.1_APIME N 0.000
CLEC000374 Cimex lectularius CLEC000374 N 0.000
CLEC013286 Cimex lectularius CLEC013286 N 0.000
CPIJ012901 Culex quinquefasciatus CPIJ012901 N 0.000
CpipJ_CPIJ012901 Culex pipiens CpipJ_CPIJ012901 N 0.000
ENSFALG00000014565 Ficedula albicollis ENSFALG00000014565 N 0.000
ENSGMOG00000013781 Gadus morhua ENSGMOG00000013781 N 0.000
ENSLOCG00000003791 Lepisosteus oculatus ENSLOCG00000003791 I 0.000
ENSOARG00000006771 Ovis aries ENSOARG00000006771 N 0.000
ENSPSIG00000008887 Pelodiscus sinensis ENSPSIG00000008887 N 0.000
ENSPSIG00000013477 Pelodiscus sinensis ENSPSIG00000013477 N 0.000
estExt_fgenesh2_pg.C_20012 Branchiostoma floridae estExt_fgenesh2_pg.C_20012 N 0.000
GA25126 Drosophila pseudoobscura FBgn0246509 N 0.000
GA28679 Drosophila pseudoobscura FBgn0250039 N 0.000
HHAL000942-PA Halyomorpha halys HHAL000942-PA N 0.000
HHAL008173-PA Halyomorpha halys HHAL008173-PA N 0.000
ISCW004118 Ixodes scapularis ISCW004118 N 0.000
KLF1 Pteropus vampyrus ENSPVAG00000014711 N 0.000
KLF15 Monodelphis domestica ENSMODG00000022616 N 0.000
KLF15 Taeniopygia guttata ENSTGUG00000008214 N 0.000
KLF15 Felis catus ENSFCAG00000015732 N 0.000
KLF9 Canis familiaris ENSCAFG00000001867 N 0.000
L798_04124 Zootermopsis nevadensis L798_04124 N 0.000
LDEC010928 Leptinotarsa decemlineata LDEC010928 N 0.000
LDEC024398 Leptinotarsa decemlineata LDEC024398 N 0.000
LLOJ001749 Lutzomyia longipalpis LLOJ001749 N 0.000
MESCA001789 Megaselia scalaris MESCA001789 N 0.000
Ocbimv22007603m.g Octopus bimaculoides Ocbimv22007603m.g N 0.000
PPAI010678 Phlebotomus papatasi PPAI010678 N 0.000
SMAR000017 Strigamia maritima SMAR000017 N 0.000
TC003611 Tribolium castaneum TC003611 N 0.000