CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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mgf025174m
(
Mimulus guttatus
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
mgf025174m
T227755_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN
NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.655
0.579
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN
NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.655
0.579
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.655
0.561
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.655
0.561
ATHB-51
M00867_2.00
Arabidopsis thaliana
ATWATKNN
NNMATWAT
PBM
Franco-Zorrilla et al.(2014)
ATHB51
0.611
0.509
ATHB-51
M06927_2.00
Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH
Dap-seq
OMalley et al.(2016)
LMI1_col_a
0.611
0.509
ATHB-51
M06928_2.00
Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN
Dap-seq
OMalley et al.(2016)
LMI1_colamp_a
0.611
0.509
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mgf025174m
Homeodomain
18
74
KSRKKRLTENQVRLLESNFSSNNKLEPDRKCQLAAELGVPPRQVSIWYQNKRARDKA
Links
Other
Homeodomain
family TFs
Other
Mimulus guttatus
TFs
147 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy