Sakowv30000867m.g (Saccoglossus kowalevskii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Sakowv30000867m.g T227861_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hoxa6
M00494_2.00 		Mus musculus
NWWATKRNN
NNYMATWWN		 PBM
Berger et al.(2008)
Hoxa6_1040 		0.266 1.000
HOXA6
M04974_2.00 		Homo sapiens
NNTAATKRVN
NBYMATTANN		 SELEX
Yin et al.(2017)
HOXA6_eDBD_HT-SELEX 		0.266 1.000
HOXA6
M04975_2.00 		Homo sapiens
NNTAATKRBN
NVYMATTANN		 SELEX
Yin et al.(2017)
HOXA6_eDBD_Methyl-HT-SELEX_1 		0.266 1.000
HOXA6
M04976_2.00 		Homo sapiens
NTAAYGRY
RYCRTTAN		 SELEX
Yin et al.(2017)
HOXA6_eDBD_Methyl-HT-SELEX_2 		0.266 1.000
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23946472_peptide Homeodomain 149 182

Links

Other Homeodomain family TFs
Other Saccoglossus kowalevskii TFs

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199 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action