CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Sakowv30037695m.g
(
Saccoglossus kowalevskii
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Sakowv30037695m.g
T227969_2.00
JGI:Metazome (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ceh-36
M00673_2.00
Caenorhabditis elegans
NWAATCYN
NRGATTWN
PBM
Narasimhan et al.(2015)
pTH10730
0.653
0.474
ceh-53
M00679_2.00
Caenorhabditis elegans
HTAATCYN
NRGATTAD
PBM
Narasimhan et al.(2015)
pTH10699
0.636
0.491
NEMVEDRAFT_v1g113057
M02144_2.00
Nematostella vectensis
NYTAATCCBN
NVGGATTARN
PBM
Weirauch et al.(2014)
pTH6135
0.636
0.474
Dmbx1
M00441_2.00
Mus musculus
NTAATCYNN
NNRGATTAN
PBM
Berger et al.(2008)
Dmbx1_2277
0.631
0.474
DMBX1
M03236_2.00
Homo sapiens
NHTAATCCBN
NVGGATTADN
SELEX
Jolma et al.(2013)
DMBX1_1
0.631
0.474
DMBX1
M05383_2.00
Homo sapiens
NTAATCSN
NSGATTAN
SELEX
Yin et al.(2017)
DMBX1_eDBD_HT-SELEX
0.631
0.474
DMBX1
M05384_2.00
Homo sapiens
HTAATCCN
NGGATTAD
SELEX
Yin et al.(2017)
DMBX1_eDBD_Methyl-HT-SELEX
0.631
0.474
ceh-37
M00674_2.00
Caenorhabditis elegans
HTAATCYN
NRGATTAD
PBM
Narasimhan et al.(2015)
pTH10716
0.629
0.456
CRX
M00274_2.00
Homo sapiens
NMTAATCCSN
NSGGATTAKN
PBM
Barrera et al.(2016)
CRX_REF
0.629
0.439
Crx
M00489_2.00
Mus musculus
NWAAKMBN
NVKMTTWN
PBM
Berger et al.(2008)
Crx_3485
0.629
0.439
CRX
M04949_2.00
Homo sapiens
NTAATCCN
NGGATTAN
SELEX
Yin et al.(2017)
CRX_FL_HT-SELEX
0.629
0.439
Crx
M08139_2.00
Mus musculus
YTAATCCYCYY
RRGRGGATTAR
ChIP-seq
Mathelier et al.(2014)
MA0467.1
0.629
0.439
CRX
M09132_2.00
Homo sapiens
BYTAATCCBHYYN
NRRDVGGATTARV
Misc
Kulakovskiy et al.(2013)
CRX_HUMAN.H11MO.0.B
0.629
0.439
Crx
M09208_2.00
Mus musculus
BYTAATCCBHYYN
NRRDVGGATTARV
Misc
Kulakovskiy et al.(2013)
CRX_MOUSE.H11MO.0.A
0.629
0.439
Crx
M09577_2.00
Mus musculus
NYTAATCC
GGATTARN
Misc
Heinz et al.(2010)
Retina-Crx_GSE20012
0.629
0.439
CRX
M10647_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CRX_Q4_01
0.629
0.439
CRX
M10648_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CRX_Q4_02
0.629
0.439
CRX
M00270_2.00
Homo sapiens
NWDAKNN
NNMTHWN
PBM
Barrera et al.(2016)
CRX_E80A
0.629
0.439
CRX
M00271_2.00
Homo sapiens
NHDAKNN
NNMTHDN
PBM
Barrera et al.(2016)
CRX_R41Q
0.629
0.439
CRX
M00272_2.00
Homo sapiens
NNHNATNN
NNATNDNN
PBM
Barrera et al.(2016)
CRX_R41W
0.629
0.439
CRX
M00275_2.00
Homo sapiens
NMTAATCCSN
NSGGATTAKN
PBM
Barrera et al.(2016)
CRX_V66I
0.629
0.439
CRX
M04950_2.00
Homo sapiens
HTAATCCN
NGGATTAD
SELEX
Yin et al.(2017)
CRX_FL_Methyl-HT-SELEX
0.629
0.439
Otx1
M00396_2.00
Mus musculus
NTAAKCYN
NRGMTTAN
PBM
Berger et al.(2008)
Otx1_2325
0.623
0.421
Otx2
M00418_2.00
Mus musculus
NTAAKMBN
NVKMTTAN
PBM
Berger et al.(2008)
Otx2_3441
0.623
0.421
OTX1
M03116_2.00
Homo sapiens
NNTAAKCGGATTANN
NNTAATCCGMTTANN
SELEX
Jolma et al.(2013)
OTX1_1
0.623
0.421
OTX1
M03117_2.00
Homo sapiens
NTAATCSB
VSGATTAN
SELEX
Jolma et al.(2013)
OTX1_2
0.623
0.421
OTX2
M03197_2.00
Homo sapiens
NHTAAKCGGATTANN
NNTAATCCGMTTADN
SELEX
Jolma et al.(2013)
OTX2_1
0.623
0.421
OTX2
M03198_2.00
Homo sapiens
HTAATCCB
VGGATTAD
SELEX
Jolma et al.(2013)
OTX2_2
0.623
0.421
Otx1
M03249_2.00
Mus musculus
NNTAAKCGGATTANN
NNTAATCCGMTTANN
SELEX
Jolma et al.(2013)
Otx1_1
0.623
0.421
Otx1
M03250_2.00
Mus musculus
NTAATCCN
NGGATTAN
SELEX
Jolma et al.(2013)
Otx1_2
0.623
0.421
oc
M03808_2.00
Drosophila melanogaster
HTAATCCB
VGGATTAD
SELEX
Nitta et al.(2015)
oc_1
0.623
0.421
OTX1
M05022_2.00
Homo sapiens
NTAATCCN
NGGATTAN
SELEX
Yin et al.(2017)
OTX1_eDBD_HT-SELEX
0.623
0.421
OTX1
M05024_2.00
Homo sapiens
NTAATCCNNN
NNNGGATTAN
SELEX
Yin et al.(2017)
OTX1_FL_HT-SELEX
0.623
0.421
OTX2
M05251_2.00
Homo sapiens
NTAATCCN
NGGATTAN
SELEX
Yin et al.(2017)
OTX2_FL_HT-SELEX
0.623
0.421
oc
M06502_2.00
Drosophila melanogaster
TAATCC
GGATTA
B1H
Mathelier et al.(2014)
MA0234.1
0.623
0.421
oc
M06282_2.00
Drosophila melanogaster
WTAATCC
GGATTAW
B1H
Zhu et al.(2011)
Oc_Cell_FBgn0004102
0.623
0.421
oc
M06283_2.00
Drosophila melanogaster
NTAATCCB
VGGATTAN
B1H
Zhu et al.(2011)
Oc_SOLEXA_FBgn0004102
0.623
0.421
OTX2
M09153_2.00
Homo sapiens
BYTAATCCYYN
NRRGGATTARV
Misc
Kulakovskiy et al.(2013)
OTX2_HUMAN.H11MO.0.A
0.623
0.421
Otx2
M09183_2.00
Mus musculus
HTAATCCYNYNN
NNRNRGGATTAD
Misc
Kulakovskiy et al.(2013)
OTX2_MOUSE.H11MO.0.A
0.623
0.421
Otx2
M09569_2.00
Mus musculus
NHTAATCCHB
VDGGATTADN
Misc
Heinz et al.(2010)
EpiLC-Otx2_GSE56098
0.623
0.421
oc
M09681_2.00
Drosophila melanogaster
HTAATCCN
NGGATTAD
Misc
Kulakovskiy et al.(2009)
oc
0.623
0.421
OTX1
M10673_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OTX1_Q5
0.623
0.421
OTX2
M10727_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OTX2_Q3_01
0.623
0.421
OTX2
M10728_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OTX2_Q3
0.623
0.421
OTX1
M05023_2.00
Homo sapiens
NTAATCCN
NGGATTAN
SELEX
Yin et al.(2017)
OTX1_eDBD_Methyl-HT-SELEX
0.623
0.421
OTX1
M05025_2.00
Homo sapiens
HTAATCCNHN
NDNGGATTAD
SELEX
Yin et al.(2017)
OTX1_FL_Methyl-HT-SELEX
0.623
0.421
OTX2
M05252_2.00
Homo sapiens
NTAATCCN
NGGATTAN
SELEX
Yin et al.(2017)
OTX2_FL_Methyl-HT-SELEX
0.623
0.421
CRX
M00273_2.00
Homo sapiens
NNYTAATCCVN
NBGGATTARNN
PBM
Barrera et al.(2016)
CRX_R90W
0.619
0.421
Gsc
M00411_2.00
Mus musculus
NNTAATYBN
NVRATTANN
PBM
Berger et al.(2008)
Gsc_2327
0.614
0.439
GSC
M03146_2.00
Homo sapiens
NHTAATCCNH
DNGGATTADN
SELEX
Jolma et al.(2013)
GSC_1
0.614
0.439
GSC
M05134_2.00
Homo sapiens
NTAATCCB
VGGATTAN
SELEX
Yin et al.(2017)
GSC_eDBD_HT-SELEX
0.614
0.439
GSC
M05136_2.00
Homo sapiens
HTAATCCN
NGGATTAD
SELEX
Yin et al.(2017)
GSC_FL_HT-SELEX
0.614
0.439
gsc
M09584_2.00
Xenopus tropicalis
NTAATCYN
NRGATTAN
Misc
Heinz et al.(2010)
FrogEmbryos-GSC_DRA000576
0.614
0.439
GSC
M05135_2.00
Homo sapiens
HTAATCCB
VGGATTAD
SELEX
Yin et al.(2017)
GSC_eDBD_Methyl-HT-SELEX
0.614
0.439
GSC
M05137_2.00
Homo sapiens
HTAATCCN
NGGATTAD
SELEX
Yin et al.(2017)
GSC_FL_Methyl-HT-SELEX
0.614
0.439
HBX4_ECHGR
M02195_2.00
Echinococcus granulosus
NHTAATCYNN
NNRGATTADN
PBM
Weirauch et al.(2014)
pTH6301
0.607
0.421
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
23943699_peptide
Homeodomain
72
128
RKPRTRFERHQLEALEKAFVSAQYPDHFHLQSLSITTGLDDDTIQVWFKNRRQKEKR
Links
Other
Homeodomain
family TFs
Other
Saccoglossus kowalevskii
TFs
668 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
A1O1_00584
Capronia coronata
A1O1_00584
N
0.000
A1O5_03686
Cladophialophora psammophila
A1O5_03686
N
0.000
A1O7_00496
Cladophialophora yegresii
A1O7_00496
N
0.000
A1O9_04841
Exophiala aquamarina
A1O9_04841
N
0.000
ARB_04972
Arthroderma benhamiae
ARB_04972
N
0.000
BDDG_00723
Blastomyces dermatitidis
BDDG_00723
N
0.000
CIMG_01069
Coccidioides immitis
CIMG_01069
N
0.000
CPC735_052920
Coccidioides posadasii
CPC735_052920
N
0.000
EPUS_07706
Endocarpon pusillum
EPUS_07706
N
0.000
G647_00537
Cladophialophora carrionii
G647_00537
N
0.000
H101_00145
Trichophyton interdigitale
H101_00145
N
0.000
H102_05631
Trichophyton rubrum
H102_05631
N
0.000
H105_05671
Trichophyton soudanense
H105_05671
N
0.000
HCBG_00932
Histoplasma capsulatum
HCBG_00932
N
0.000
HMPREF1120_06189
Exophiala dermatitidis
HMPREF1120_06189
N
0.000
MBM_04902
Marssonina brunnea
MBM_04902
N
0.000
MCYG_04527
Microsporum canis
MCYG_04527
N
0.000
MCYG_04527
Arthroderma otae
MCYG_04527
N
0.000
MGYG_02110
Microsporum gypseum
MGYG_02110
N
0.000
PAAG_11207
Paracoccidioides sp lutzii
PAAG_11207
N
0.000
PABG_01676
Paracoccidioides brasiliensis
PABG_01676
N
0.000
PMAA_029710
Talaromyces marneffei
PMAA_029710
N
0.000
PV05_11133
Exophiala xenobiotica
PV05_11133
N
0.000
PV07_10166
Cladophialophora immunda
PV07_10166
N
0.000
PV08_06011
Exophiala spinifera
PV08_06011
N
0.000
PV10_07538
Exophiala mesophila
PV10_07538
N
0.000
PV11_08024
Exophiala sideris
PV11_08024
N
0.000
PVAR5_2222
Byssochlamys spectabilis
PVAR5_2222
N
0.000
TEQG_02005
Trichophyton equinum
TEQG_02005
N
0.000
TRV_06300
Trichophyton verrucosum
TRV_06300
N
0.000
TSTA_068680
Talaromyces stipitatus
TSTA_068680
N
0.000
UREG_01015
Uncinocarpus reesii
UREG_01015
N
0.000
W97_06158
Coniosporium apollinis
W97_06158
N
0.000
Z517_08280
Fonsecaea pedrosoi
Z517_08280
N
0.000
Z518_04016
Rhinocladiella mackenziei
Z518_04016
N
0.000
Z519_03005
Cladophialophora bantiana
Z519_03005
N
0.000