Sakowv30037695m.g (Saccoglossus kowalevskii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Sakowv30037695m.g T227969_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ceh-36
M00673_2.00
Caenorhabditis elegans
NWAATCYN

NRGATTWN
PBM
Narasimhan et al.(2015)
pTH10730
0.653 0.474
ceh-53
M00679_2.00
Caenorhabditis elegans
HTAATCYN

NRGATTAD
PBM
Narasimhan et al.(2015)
pTH10699
0.636 0.491
NEMVEDRAFT_v1g113057
M02144_2.00
Nematostella vectensis
NYTAATCCBN

NVGGATTARN
PBM
Weirauch et al.(2014)
pTH6135
0.636 0.474
Dmbx1
M00441_2.00
Mus musculus
NTAATCYNN

NNRGATTAN
PBM
Berger et al.(2008)
Dmbx1_2277
0.631 0.474
DMBX1
M03236_2.00
Homo sapiens
NHTAATCCBN

NVGGATTADN
SELEX
Jolma et al.(2013)
DMBX1_1
0.631 0.474
DMBX1
M05383_2.00
Homo sapiens
NTAATCSN

NSGATTAN
SELEX
Yin et al.(2017)
DMBX1_eDBD_HT-SELEX
0.631 0.474
DMBX1
M05384_2.00
Homo sapiens
HTAATCCN

NGGATTAD
SELEX
Yin et al.(2017)
DMBX1_eDBD_Methyl-HT-SELEX
0.631 0.474
ceh-37
M00674_2.00
Caenorhabditis elegans
HTAATCYN

NRGATTAD
PBM
Narasimhan et al.(2015)
pTH10716
0.629 0.456
CRX
M00274_2.00
Homo sapiens
NMTAATCCSN

NSGGATTAKN
PBM
Barrera et al.(2016)
CRX_REF
0.629 0.439
Crx
M00489_2.00
Mus musculus
NWAAKMBN

NVKMTTWN
PBM
Berger et al.(2008)
Crx_3485
0.629 0.439
CRX
M04949_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
CRX_FL_HT-SELEX
0.629 0.439
Crx
M08139_2.00
Mus musculus
YTAATCCYCYY

RRGRGGATTAR
ChIP-seq
Mathelier et al.(2014)
MA0467.1
0.629 0.439
CRX
M09132_2.00
Homo sapiens
BYTAATCCBHYYN

NRRDVGGATTARV
Misc
Kulakovskiy et al.(2013)
CRX_HUMAN.H11MO.0.B
0.629 0.439
Crx
M09208_2.00
Mus musculus
BYTAATCCBHYYN

NRRDVGGATTARV
Misc
Kulakovskiy et al.(2013)
CRX_MOUSE.H11MO.0.A
0.629 0.439
Crx
M09577_2.00
Mus musculus
NYTAATCC

GGATTARN
Misc
Heinz et al.(2010)
Retina-Crx_GSE20012
0.629 0.439
CRX
M10647_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CRX_Q4_01
0.629 0.439
CRX
M10648_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CRX_Q4_02
0.629 0.439
CRX
M00270_2.00
Homo sapiens
NWDAKNN

NNMTHWN
PBM
Barrera et al.(2016)
CRX_E80A
0.629 0.439
CRX
M00271_2.00
Homo sapiens
NHDAKNN

NNMTHDN
PBM
Barrera et al.(2016)
CRX_R41Q
0.629 0.439
CRX
M00272_2.00
Homo sapiens
NNHNATNN

NNATNDNN
PBM
Barrera et al.(2016)
CRX_R41W
0.629 0.439
CRX
M00275_2.00
Homo sapiens
NMTAATCCSN

NSGGATTAKN
PBM
Barrera et al.(2016)
CRX_V66I
0.629 0.439
CRX
M04950_2.00
Homo sapiens
HTAATCCN

NGGATTAD
SELEX
Yin et al.(2017)
CRX_FL_Methyl-HT-SELEX
0.629 0.439
Otx1
M00396_2.00
Mus musculus
NTAAKCYN

NRGMTTAN
PBM
Berger et al.(2008)
Otx1_2325
0.623 0.421
Otx2
M00418_2.00
Mus musculus
NTAAKMBN

NVKMTTAN
PBM
Berger et al.(2008)
Otx2_3441
0.623 0.421
OTX1
M03116_2.00
Homo sapiens
NNTAAKCGGATTANN

NNTAATCCGMTTANN
SELEX
Jolma et al.(2013)
OTX1_1
0.623 0.421
OTX1
M03117_2.00
Homo sapiens
NTAATCSB

VSGATTAN
SELEX
Jolma et al.(2013)
OTX1_2
0.623 0.421
OTX2
M03197_2.00
Homo sapiens
NHTAAKCGGATTANN

NNTAATCCGMTTADN
SELEX
Jolma et al.(2013)
OTX2_1
0.623 0.421
OTX2
M03198_2.00
Homo sapiens
HTAATCCB

VGGATTAD
SELEX
Jolma et al.(2013)
OTX2_2
0.623 0.421
Otx1
M03249_2.00
Mus musculus
NNTAAKCGGATTANN

NNTAATCCGMTTANN
SELEX
Jolma et al.(2013)
Otx1_1
0.623 0.421
Otx1
M03250_2.00
Mus musculus
NTAATCCN

NGGATTAN
SELEX
Jolma et al.(2013)
Otx1_2
0.623 0.421
oc
M03808_2.00
Drosophila melanogaster
HTAATCCB

VGGATTAD
SELEX
Nitta et al.(2015)
oc_1
0.623 0.421
OTX1
M05022_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
OTX1_eDBD_HT-SELEX
0.623 0.421
OTX1
M05024_2.00
Homo sapiens
NTAATCCNNN

NNNGGATTAN
SELEX
Yin et al.(2017)
OTX1_FL_HT-SELEX
0.623 0.421
OTX2
M05251_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
OTX2_FL_HT-SELEX
0.623 0.421
oc
M06502_2.00
Drosophila melanogaster
TAATCC

GGATTA
B1H
Mathelier et al.(2014)
MA0234.1
0.623 0.421
oc
M06282_2.00
Drosophila melanogaster
WTAATCC

GGATTAW
B1H
Zhu et al.(2011)
Oc_Cell_FBgn0004102
0.623 0.421
oc
M06283_2.00
Drosophila melanogaster
NTAATCCB

VGGATTAN
B1H
Zhu et al.(2011)
Oc_SOLEXA_FBgn0004102
0.623 0.421
OTX2
M09153_2.00
Homo sapiens
BYTAATCCYYN

NRRGGATTARV
Misc
Kulakovskiy et al.(2013)
OTX2_HUMAN.H11MO.0.A
0.623 0.421
Otx2
M09183_2.00
Mus musculus
HTAATCCYNYNN

NNRNRGGATTAD
Misc
Kulakovskiy et al.(2013)
OTX2_MOUSE.H11MO.0.A
0.623 0.421
Otx2
M09569_2.00
Mus musculus
NHTAATCCHB

VDGGATTADN
Misc
Heinz et al.(2010)
EpiLC-Otx2_GSE56098
0.623 0.421
oc
M09681_2.00
Drosophila melanogaster
HTAATCCN

NGGATTAD
Misc
Kulakovskiy et al.(2009)
oc
0.623 0.421
OTX1
M10673_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OTX1_Q5
0.623 0.421
OTX2
M10727_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OTX2_Q3_01
0.623 0.421
OTX2
M10728_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OTX2_Q3
0.623 0.421
OTX1
M05023_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
OTX1_eDBD_Methyl-HT-SELEX
0.623 0.421
OTX1
M05025_2.00
Homo sapiens
HTAATCCNHN

NDNGGATTAD
SELEX
Yin et al.(2017)
OTX1_FL_Methyl-HT-SELEX
0.623 0.421
OTX2
M05252_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
OTX2_FL_Methyl-HT-SELEX
0.623 0.421
CRX
M00273_2.00
Homo sapiens
NNYTAATCCVN

NBGGATTARNN
PBM
Barrera et al.(2016)
CRX_R90W
0.619 0.421
Gsc
M00411_2.00
Mus musculus
NNTAATYBN

NVRATTANN
PBM
Berger et al.(2008)
Gsc_2327
0.614 0.439
GSC
M03146_2.00
Homo sapiens
NHTAATCCNH

DNGGATTADN
SELEX
Jolma et al.(2013)
GSC_1
0.614 0.439
GSC
M05134_2.00
Homo sapiens
NTAATCCB

VGGATTAN
SELEX
Yin et al.(2017)
GSC_eDBD_HT-SELEX
0.614 0.439
GSC
M05136_2.00
Homo sapiens
HTAATCCN

NGGATTAD
SELEX
Yin et al.(2017)
GSC_FL_HT-SELEX
0.614 0.439
gsc
M09584_2.00
Xenopus tropicalis
NTAATCYN

NRGATTAN
Misc
Heinz et al.(2010)
FrogEmbryos-GSC_DRA000576
0.614 0.439
GSC
M05135_2.00
Homo sapiens
HTAATCCB

VGGATTAD
SELEX
Yin et al.(2017)
GSC_eDBD_Methyl-HT-SELEX
0.614 0.439
GSC
M05137_2.00
Homo sapiens
HTAATCCN

NGGATTAD
SELEX
Yin et al.(2017)
GSC_FL_Methyl-HT-SELEX
0.614 0.439
HBX4_ECHGR
M02195_2.00
Echinococcus granulosus
NHTAATCYNN

NNRGATTADN
PBM
Weirauch et al.(2014)
pTH6301
0.607 0.421
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23943699_peptide Homeodomain 72 128

Links

Other Homeodomain family TFs
Other Saccoglossus kowalevskii TFs

668 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000003318 Ailuropoda melanoleuca ENSAMEG00000003318 I 0.000
Aqu1.222022 Amphimedon queenslandica Aqu1.222022 I 0.000
ENSAPLG00000011496 Anas platyrhynchos ENSAPLG00000011496 I 0.000
GB42212 Apis mellifera GB42212 N 0.000
Afo_R015053 Aptenodytes forsteri Afo_R015053 I 0.000
ENSAMXG00000002880 Astyanax mexicanus ENSAMXG00000002880 I 0.000
ACEP23524 Atta cephalotes ACEP23524 I 0.000
BGIBMGA009650 Bombyx mori BGIBMGA009650 N 0.000
ENSP00000332973-D1 Bos grunniens ENSP00000332973-D1 I 0.000
Brh_R001114 Buceros rhinoceros Brh_R001114 I 0.000
SMAD3 Callithrix jacchus ENSCJAG00000002088 I 0.000
Aan_R002236 Calypte anna Aan_R002236 I 0.000
Aan_R005610 Calypte anna Aan_R005610 I 0.000
Cflo_04487--XP_396056.3_APIME Camponotus floridanus Cflo_04487--XP_396056.3_APIME N 0.000
SMAD3 Canis familiaris ENSCAFG00000017388 I 0.000
CapteG167863 Capitella teleta CapteG167863 I 0.000
SMAD3 Cavia porcellus ENSCPOG00000021314 I 0.000
ENSCSAG00000013275 Chlorocebus sabaeus ENSCSAG00000013275 I 0.000
SMAD3 Choloepus hoffmanni ENSCHOG00000001562 I 0.000
CLEC004107 Cimex lectularius CLEC004107 I 0.000
CGI_10017370 Crassostrea gigas CGI_10017370 I 0.000
CpipJ_CPIJ018354 Culex pipiens CpipJ_CPIJ018354 I 0.000
smad3a Danio rerio ENSDARG00000036096 I 0.000
DAPPUDRAFT_314805 Daphnia pulex DAPPUDRAFT_314805 I 0.000
SMAD3 Dasypus novemcinctus ENSDNOG00000044090 I 0.000
YQE_05290 Dendroctonus ponderosae YQE_05290 N 0.000
SMAD3 Echinops telfairi ENSETEG00000003356 I 0.000
ENSFALG00000012861 Ficedula albicollis ENSFALG00000012861 I 0.000
ENSGMOG00000008364 Gadus morhua ENSGMOG00000008364 I 0.000
ENSGALG00000014184 Gallus gallus ENSGALG00000014184 I 0.000
ENSGALG00000007870 Gallus gallus ENSGALG00000007870 I 0.000
smad3b Gasterosteus aculeatus ENSGACG00000005092 I 0.000
SMAD3 Gasterosteus aculeatus ENSGACG00000016882 I 0.000
Gfo_R005908 Geospiza fortis Gfo_R005908 I 0.000
HHAL008503-PA Halyomorpha halys HHAL008503-PA N 0.000
SMAD3 Homo sapiens ENSG00000166949 D 0.000
ENSSTOG00000010286 Ictidomys tridecemlineatus ENSSTOG00000010286 I 0.000
ISCW001846 Ixodes scapularis ISCW001846 I 0.000
ENSLOCG00000013897 Lepisosteus oculatus ENSLOCG00000013897 I 0.000
LotgiG189014 Lottia gigantea LotgiG189014 I 0.000
ENSP00000332973 Macaca fascicularis ENSP00000332973 I 0.000
SMAD3 Macaca mulatta ENSMMUG00000015455 I 0.000
SMAD3 Meleagris gallopavo ENSMGAG00000009879 I 0.000
ENSMGAG00000001351 Meleagris gallopavo ENSMGAG00000001351 I 0.000
SMAD3 Microcebus murinus ENSMICG00000006119 I 0.000
SMAD2 Microcebus murinus ENSMICG00000007882 I 0.000
SMAD3 Monodelphis domestica ENSMODG00000009609 I 0.000
Smad3 Mus musculus ENSMUSG00000032402 D 0.000
Myotis_brandtii_Smad3_10022298 Myotis brandtii Myotis_brandtii_Smad3_10022298 I 0.000
NV10880 Nasonia vitripennis NV10880 I 0.000
NEMVEDRAFT_v1g168041 Nematostella vectensis NEMVEDRAFT_v1g168041 I 0.000
ENSNLEG00000012983 Nomascus leucogenys ENSNLEG00000012983 I 0.000
SMAD3 Ochotona princeps ENSOPRG00000014996 I 0.000
Ogr07750 Ophisaurus gracilis Ogr07750 I 0.000
ENSONIG00000013271 Oreochromis niloticus ENSONIG00000013271 I 0.000
ENSONIG00000004109 Oreochromis niloticus ENSONIG00000004109 I 0.000
ENSONIG00000015464 Oreochromis niloticus ENSONIG00000015464 I 0.000
ENSORLG00000011834 Oryzias latipes ENSORLG00000011834 I 0.000
SMAD3 Otolemur garnettii ENSOGAG00000014217 I 0.000
ENSOARG00000018267 Ovis aries ENSOARG00000018267 I 0.000
SMAD3 Pan troglodytes ENSPTRG00000007199 I 0.000
ENSPANG00000016627 Papio anubis ENSPANG00000016627 I 0.000
PHUM033930 Pediculus humanus PHUM033930 I 0.000
ENSPMAG00000000489 Petromyzon marinus ENSPMAG00000000489 I 0.000
PPAI005080 Phlebotomus papatasi PPAI005080 I 0.000
ENSPFOG00000004885 Poecilia formosa ENSPFOG00000004885 I 0.000
ENSPFOG00000006336 Poecilia formosa ENSPFOG00000006336 I 0.000
ENSPFOG00000008802 Poecilia formosa ENSPFOG00000008802 I 0.000
ENSPPYG00000006583 Pongo abelii ENSPPYG00000006583 I 0.000
SMAD3 Procavia capensis ENSPCAG00000008103 I 0.000
SMAD3 Pteropus vampyrus ENSPVAG00000002626 I 0.000
Smad3 Rattus norvegicus ENSRNOG00000008620 I 0.000
RPRC003748 Rhodnius prolixus RPRC003748 N 0.000
Sakowv30032220m.g Saccoglossus kowalevskii Sakowv30032220m.g I 0.000
SINV22770 Solenopsis invicta SINV22770 I 0.000
SMAR008230 Strigamia maritima SMAR008230 I 0.000
SPU_017642 Strongylocentrotus purpuratus SPU_017642 I 0.000
smad3a Takifugu rubripes ENSTRUG00000016858 I 0.000
smad3b Takifugu rubripes ENSTRUG00000014802 I 0.000
smad3a Tetraodon nigroviridis ENSTNIG00000009546 I 0.000
ENSTNIG00000004827 Tetraodon nigroviridis ENSTNIG00000004827 I 0.000
D917_04509 Trichinella nativa D917_04509 I 0.000
EFV60166 Trichinella spiralis EFV60166 I 0.000
TMUE_s0005013500 Trichuris muris TMUE_s0005013500 I 0.000
D918_09504 Trichuris suis D918_09504 I 0.000
TTRE_0000192701 Trichuris trichiura TTRE_0000192701 I 0.000
ENSTBEG00000003884 Tupaia belangeri ENSTBEG00000003884 I 0.000
Tal_R000062 Tyto alba Tal_R000062 I 0.000
Tal_R011237 Tyto alba Tal_R011237 I 0.000
AAB39329 Xenopus laevis AAB39329 I 0.000
smad2.S Xenopus laevis XB-GENE-864923 I 0.000
smad3.L Xenopus laevis XB-GENE-864816 I 0.000
smad3 Xenopus tropicalis XB-GENE-481992 I 0.000
ENSXMAG00000002377 Xiphophorus maculatus ENSXMAG00000002377 I 0.000
ENSXMAG00000003553 Xiphophorus maculatus ENSXMAG00000003553 I 0.000
ENSXMAG00000004505 Xiphophorus maculatus ENSXMAG00000004505 I 0.000
L798_14024 Zootermopsis nevadensis L798_14024 I 0.000