Sakowv30040088m.g (Saccoglossus kowalevskii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Sakowv30040088m.g T227997_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Nkx3-2
M00506_2.00
Mus musculus
NNRAGDRNN

NNYHCTYNN
PBM
Berger et al.(2008)
Bapx1_2343
0.855 0.930
NKX3-2
M05012_2.00
Homo sapiens
NNTAAGTGSN

NSCACTTANN
SELEX
Yin et al.(2017)
NKX3-2_eDBD_HT-SELEX
0.855 0.930
NKX3-2
M09138_2.00
Homo sapiens
TTAAGTGBNH

DNVCACTTAA
Misc
Kulakovskiy et al.(2013)
NKX32_HUMAN.H11MO.0.C
0.855 0.930
Nkx3-2
M09212_2.00
Mus musculus
TTAAGTGBNH

DNVCACTTAA
Misc
Kulakovskiy et al.(2013)
NKX32_MOUSE.H11MO.0.B
0.855 0.930
NKX3-2
M10663_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX32_01
0.855 0.930
NKX3-2
M05013_2.00
Homo sapiens
NNTAAGTGBN

NVCACTTANN
SELEX
Yin et al.(2017)
NKX3-2_eDBD_Methyl-HT-SELEX_1
0.855 0.930
NKX3-2
M05014_2.00
Homo sapiens
NTAACGHB

VDCGTTAN
SELEX
Yin et al.(2017)
NKX3-2_eDBD_Methyl-HT-SELEX_2
0.855 0.930
bap
M00560_2.00
Drosophila melanogaster
NDAAGTRBNN

NNVYACTTHN
PBM
Busser et al.(2012a)
Bap
0.843 0.825
bap
M02119_2.00
Drosophila melanogaster
NYTAAGTRSNN

NNSYACTTARN
PBM
Weirauch et al.(2014)
pTH5945
0.843 0.825
bap
M03812_2.00
Drosophila melanogaster
NNTAAGTGBN

NVCACTTANN
SELEX
Nitta et al.(2015)
bap_1
0.843 0.825
bap
M06504_2.00
Drosophila melanogaster
TTAAGTR

YACTTAA
B1H
Mathelier et al.(2014)
MA0211.1
0.843 0.825
bap
M06287_2.00
Drosophila melanogaster
NBTTAAGTRN

NYACTTAAVN
B1H
Zhu et al.(2011)
Bap_Cell_FBgn0004862
0.843 0.825
bap
M06288_2.00
Drosophila melanogaster
NYTAAKTR

YAMTTARN
B1H
Zhu et al.(2011)
Bap_SOLEXA_FBgn0004862
0.843 0.825
Nkx3-1
M00170_2.00
Mus musculus
NDAAGTRBNN

NNVYACTTHN
PBM
Badis et al.(2009)
Nkx3-1_2923
0.838 0.807
Nkx3-1
M00420_2.00
Mus musculus
NNAAGTRBNN

NNVYACTTNN
PBM
Berger et al.(2008)
Nkx3-1_2923
0.838 0.807
NKX3-1
M05255_2.00
Homo sapiens
NNTAAGTGSN

NSCACTTANN
SELEX
Yin et al.(2017)
NKX3-1_eDBD_HT-SELEX
0.838 0.807
NKX3-1
M09154_2.00
Homo sapiens
NYDAAGTGBYWD

HWRVCACTTHRN
Misc
Kulakovskiy et al.(2013)
NKX31_HUMAN.H11MO.0.C
0.838 0.807
Nkx3-1
M09184_2.00
Mus musculus
NYDAAGTGBYWD

HWRVCACTTHRN
Misc
Kulakovskiy et al.(2013)
NKX31_MOUSE.H11MO.0.C
0.838 0.807
NKX3-1
M09559_2.00
Homo sapiens
BTRAGTRBYY

RRVYACTYAV
Misc
Heinz et al.(2010)
LNCaP-Nkx3.1_GSE28264
0.838 0.807
NKX3-1
M10729_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6_01
0.838 0.807
NKX3-1
M10730_2.00
Homo sapiens
NWWTAAGTATWH

DWATACTTAWWN
Transfac
Matys et al.(2006)
V$NKX3A_01
0.838 0.807
NKX3-1
M10731_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX3A_Q3
0.838 0.807
NKX3-1
M05256_2.00
Homo sapiens
NNTAAGTGBN

NVCACTTANN
SELEX
Yin et al.(2017)
NKX3-1_eDBD_Methyl-HT-SELEX_1
0.838 0.807
NKX3-1
M05257_2.00
Homo sapiens
NTAAYSWB

VWSRTTAN
SELEX
Yin et al.(2017)
NKX3-1_eDBD_Methyl-HT-SELEX_2
0.838 0.807
ENSCING00000007395
M02076_2.00
Ciona intestinalis
NNNDWNWR

YWNWHNNN
PBM
Weirauch et al.(2014)
pTH5922
0.836 0.702
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23957270_peptide Homeodomain 142 198

Links

Other Homeodomain family TFs
Other Saccoglossus kowalevskii TFs

222 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pavir.J39511 Panicum virgatum Pavir.J39511 I 0.000
Si002401m.g Setaria italica Si002401m.g I 0.000
PRUPE_ppa008573mg Prunus persica PRUPE_ppa008573mg I 0.000
OS01G0821600 Oryza sativa OS01G0821600 I 0.000
ORUFI05G08750 Oryza rufipogon ORUFI05G08750 I 0.000
ORUFI01G38690 Oryza rufipogon ORUFI01G38690 I 0.000
ORGLA11G0202000 Oryza glaberrima ORGLA11G0202000 I 0.000
ORGLA05G0070000 Oryza glaberrima ORGLA05G0070000 I 0.000
ORGLA01G0292200 Oryza glaberrima ORGLA01G0292200 I 0.000
Sb03g038210 Sorghum bicolor Sb03g038210 I 0.000
OPUNC05G07410 Oryza punctata OPUNC05G07410 I 0.000
OPUNC01G34300 Oryza punctata OPUNC01G34300 I 0.000
OPUNC01G34280 Oryza punctata OPUNC01G34280 I 0.000
ONIVA11G01240 Oryza nivara ONIVA11G01240 I 0.000
ONIVA05G08650 Oryza nivara ONIVA05G08650 I 0.000
ONIVA01G40390 Oryza nivara ONIVA01G40390 I 0.000
OMERI01G32510 Oryza meridionalis OMERI01G32510 I 0.000
Si025181m.g Setaria italica Si025181m.g I 0.000
Si027574m.g Setaria italica Si027574m.g I 0.000
Pavir.J35902 Panicum virgatum Pavir.J35902 I 0.000
Pavir.Ha01933 Panicum virgatum Pavir.Ha01933 I 0.000
Pavir.Eb03563 Panicum virgatum Pavir.Eb03563 I 0.000
Pavir.Ea03258 Panicum virgatum Pavir.Ea03258 I 0.000
Pavir.Cb02194 Panicum virgatum Pavir.Cb02194 I 0.000
Pavir.Ca00459 Panicum virgatum Pavir.Ca00459 I 0.000
MDP0000299114 Malus domestica MDP0000299114 I 0.000
MDP0000146360 Malus domestica MDP0000146360 I 0.000
Pm024064 Prunus mume Pm024064 I 0.000
TRIUR3_17401 Triticum urartu TRIUR3_17401 I 0.000
TRIUR3_14306 Triticum urartu TRIUR3_14306 I 0.000
Traes_5BL_F853EA802 Triticum aestivum Traes_5BL_F853EA802 I 0.000
PK10616.1 Cannabis sativa PK10616.1 I 0.000
TRAES3BF005100010CFD_g Triticum aestivum TRAES3BF005100010CFD_g I 0.000
TRAES3BF001300030CFD_g Triticum aestivum TRAES3BF001300030CFD_g I 0.000
Si028202m.g Setaria italica Si028202m.g I 0.000
OLONG_019907 Oryza longistaminata OLONG_019907 I 0.000
OLONG_000636 Oryza longistaminata OLONG_000636 I 0.000
MLOC_68061 Hordeum vulgare MLOC_68061 I 0.000
F775_03184 Aegilops tauschii F775_03184 I 0.000
BRADI2G53520 Brachypodium distachyon BRADI2G53520 I 0.000
BRADI4G44350 Brachypodium distachyon BRADI4G44350 I 0.000
GRMZM2G432583 Zea mays GRMZM2G432583 I 0.000
BRADI4G44360 Brachypodium distachyon BRADI4G44360 I 0.000
LPERR08G11030 Leersia perrieri LPERR08G11030 I 0.000
F775_00757 Aegilops tauschii F775_00757 I 0.000
LPERR05G06630 Leersia perrieri LPERR05G06630 I 0.000
MLOC_52504 Hordeum vulgare MLOC_52504 I 0.000
GRMZM2G059562 Zea mays GRMZM2G059562 I 0.000
BGIOSGA034612 Oryza indica BGIOSGA034612 I 0.000
OB01G44170 Oryza brachyantha OB01G44170 I 0.000
OB05G17240 Oryza brachyantha OB05G17240 I 0.000
OGLUM11G00870 Oryza glumaepatula OGLUM11G00870 I 0.000
OGLUM05G08540 Oryza glumaepatula OGLUM05G08540 I 0.000
OGLUM01G39390 Oryza glumaepatula OGLUM01G39390 I 0.000
BGIOSGA004705 Oryza indica BGIOSGA004705 I 0.000
OBART11G01110 Oryza barthii OBART11G01110 I 0.000
OBART05G08130 Oryza barthii OBART05G08130 I 0.000
OBART01G35380 Oryza barthii OBART01G35380 I 0.000
BGIOSGA017556 Oryza indica BGIOSGA017556 I 0.000
Pavir.Ca00084 Panicum virgatum Pavir.Ca00084 N 0.000
TRIUR3_01447 Triticum urartu TRIUR3_01447 N 0.000
Pavir.J09582 Panicum virgatum Pavir.J09582 N 0.000
Traes_5AL_69A969FF4 Triticum aestivum Traes_5AL_69A969FF4 N 0.000
TRIUR3_16097 Triticum urartu TRIUR3_16097 N 0.000
F775_02479 Aegilops tauschii F775_02479 N 0.000
TRIUR3_20905 Triticum urartu TRIUR3_20905 N 0.000
BGIOSGA036756 Oryza indica BGIOSGA036756 N 0.000
TRIUR3_26571 Triticum urartu TRIUR3_26571 N 0.000
Pavir.J34713 Panicum virgatum Pavir.J34713 N 0.000
BRADI4G44370 Brachypodium distachyon BRADI4G44370 N 0.000
BRADI2G53500 Brachypodium distachyon BRADI2G53500 N 0.000
TRIUR3_01445 Triticum urartu TRIUR3_01445 N 0.000
F775_04954 Aegilops tauschii F775_04954 N 0.000
OS11G0117500 Oryza sativa OS11G0117500 N 0.000
LPERR12G01080 Leersia perrieri LPERR12G01080 N 0.000
F775_02480 Aegilops tauschii F775_02480 N 0.000
ORGLA12G0007600 Oryza glaberrima ORGLA12G0007600 N 0.000
OB11G10760 Oryza brachyantha OB11G10760 N 0.000
OB12G11030 Oryza brachyantha OB12G11030 N 0.000
OPUNC11G00980 Oryza punctata OPUNC11G00980 N 0.000
OBART12G00850 Oryza barthii OBART12G00850 N 0.000
OS12G0116700 Oryza sativa OS12G0116700 N 0.000
LPERR11G00970 Leersia perrieri LPERR11G00970 N 0.000
GRMZM2G169564 Zea mays GRMZM2G169564 N 0.000
GRMZM2G400559 Zea mays GRMZM2G400559 N 0.000
Si027876m.g Setaria italica Si027876m.g N 0.000
OPUNC12G00990 Oryza punctata OPUNC12G00990 N 0.000
Si019098m.g Setaria italica Si019098m.g N 0.000
Si010764m.g Setaria italica Si010764m.g N 0.000
Sb08g002560 Sorghum bicolor Sb08g002560 N 0.000
Sb05g001220 Sorghum bicolor Sb05g001220 N 0.000
OMERI11G01570 Oryza meridionalis OMERI11G01570 N 0.000