Sakowv30040088m.g (Saccoglossus kowalevskii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Sakowv30040088m.g T227997_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Nkx3-2
M00506_2.00
Mus musculus
NNRAGDRNN

NNYHCTYNN
PBM
Berger et al.(2008)
Bapx1_2343
0.855 0.930
NKX3-2
M05012_2.00
Homo sapiens
NNTAAGTGSN

NSCACTTANN
SELEX
Yin et al.(2017)
NKX3-2_eDBD_HT-SELEX
0.855 0.930
NKX3-2
M09138_2.00
Homo sapiens
TTAAGTGBNH

DNVCACTTAA
Misc
Kulakovskiy et al.(2013)
NKX32_HUMAN.H11MO.0.C
0.855 0.930
Nkx3-2
M09212_2.00
Mus musculus
TTAAGTGBNH

DNVCACTTAA
Misc
Kulakovskiy et al.(2013)
NKX32_MOUSE.H11MO.0.B
0.855 0.930
NKX3-2
M10663_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX32_01
0.855 0.930
NKX3-2
M05013_2.00
Homo sapiens
NNTAAGTGBN

NVCACTTANN
SELEX
Yin et al.(2017)
NKX3-2_eDBD_Methyl-HT-SELEX_1
0.855 0.930
NKX3-2
M05014_2.00
Homo sapiens
NTAACGHB

VDCGTTAN
SELEX
Yin et al.(2017)
NKX3-2_eDBD_Methyl-HT-SELEX_2
0.855 0.930
bap
M00560_2.00
Drosophila melanogaster
NDAAGTRBNN

NNVYACTTHN
PBM
Busser et al.(2012a)
Bap
0.843 0.825
bap
M02119_2.00
Drosophila melanogaster
NYTAAGTRSNN

NNSYACTTARN
PBM
Weirauch et al.(2014)
pTH5945
0.843 0.825
bap
M03812_2.00
Drosophila melanogaster
NNTAAGTGBN

NVCACTTANN
SELEX
Nitta et al.(2015)
bap_1
0.843 0.825
bap
M06504_2.00
Drosophila melanogaster
TTAAGTR

YACTTAA
B1H
Mathelier et al.(2014)
MA0211.1
0.843 0.825
bap
M06287_2.00
Drosophila melanogaster
NBTTAAGTRN

NYACTTAAVN
B1H
Zhu et al.(2011)
Bap_Cell_FBgn0004862
0.843 0.825
bap
M06288_2.00
Drosophila melanogaster
NYTAAKTR

YAMTTARN
B1H
Zhu et al.(2011)
Bap_SOLEXA_FBgn0004862
0.843 0.825
Nkx3-1
M00170_2.00
Mus musculus
NDAAGTRBNN

NNVYACTTHN
PBM
Badis et al.(2009)
Nkx3-1_2923
0.838 0.807
Nkx3-1
M00420_2.00
Mus musculus
NNAAGTRBNN

NNVYACTTNN
PBM
Berger et al.(2008)
Nkx3-1_2923
0.838 0.807
NKX3-1
M05255_2.00
Homo sapiens
NNTAAGTGSN

NSCACTTANN
SELEX
Yin et al.(2017)
NKX3-1_eDBD_HT-SELEX
0.838 0.807
NKX3-1
M09154_2.00
Homo sapiens
NYDAAGTGBYWD

HWRVCACTTHRN
Misc
Kulakovskiy et al.(2013)
NKX31_HUMAN.H11MO.0.C
0.838 0.807
Nkx3-1
M09184_2.00
Mus musculus
NYDAAGTGBYWD

HWRVCACTTHRN
Misc
Kulakovskiy et al.(2013)
NKX31_MOUSE.H11MO.0.C
0.838 0.807
NKX3-1
M09559_2.00
Homo sapiens
BTRAGTRBYY

RRVYACTYAV
Misc
Heinz et al.(2010)
LNCaP-Nkx3.1_GSE28264
0.838 0.807
NKX3-1
M10729_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6_01
0.838 0.807
NKX3-1
M10730_2.00
Homo sapiens
NWWTAAGTATWH

DWATACTTAWWN
Transfac
Matys et al.(2006)
V$NKX3A_01
0.838 0.807
NKX3-1
M10731_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX3A_Q3
0.838 0.807
NKX3-1
M05256_2.00
Homo sapiens
NNTAAGTGBN

NVCACTTANN
SELEX
Yin et al.(2017)
NKX3-1_eDBD_Methyl-HT-SELEX_1
0.838 0.807
NKX3-1
M05257_2.00
Homo sapiens
NTAAYSWB

VWSRTTAN
SELEX
Yin et al.(2017)
NKX3-1_eDBD_Methyl-HT-SELEX_2
0.838 0.807
ENSCING00000007395
M02076_2.00
Ciona intestinalis
NNNDWNWR

YWNWHNNN
PBM
Weirauch et al.(2014)
pTH5922
0.836 0.702
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23957270_peptide Homeodomain 142 198

Links

Other Homeodomain family TFs
Other Saccoglossus kowalevskii TFs

222 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29770.m000336 Ricinus communis 29770.m000336 I 0.000
30171.m000407 Ricinus communis 30171.m000407 I 0.000
30172.m000206 Ricinus communis 30172.m000206 I 0.000
AC233865.1_FG003 Zea mays AC233865.1_FG003 I 0.000
AMTR_s00037p00144010 Amborella trichopoda AMTR_s00037p00144010 I 0.000
AMTR_s00044p00058960 Amborella trichopoda AMTR_s00044p00058960 I 0.000
AMTR_s00149p00068500 Amborella trichopoda AMTR_s00149p00068500 I 0.000
ANAC020 Vitis vinifera VIT_19s0085g00950 I 0.000
ANAC020 Arabidopsis lyrata fgenesh2_kg.1__4648__AT1G54330.1 I 0.000
ANAC020 Populus trichocarpa POPTR_0008s08100 I 0.000
ANAC020 Arabidopsis thaliana AT1G54330 D 0.000
anac028 Arabidopsis lyrata Al_scaffold_0002_1137 I 0.000
anac028 Arabidopsis thaliana AT1G65910 D 0.000
anac045 Arabidopsis lyrata Al_scaffold_0003_260 I 0.000
anac057 Arabidopsis thaliana AT3G17730 D 0.000
anac057 Arabidopsis lyrata Al_scaffold_0003_1866 I 0.000
anac057 Vitis vinifera VIT_17s0053g00740 I 0.000
anac057 Populus trichocarpa POPTR_0012s03510 I 0.000
anac086 Arabidopsis lyrata fgenesh2_kg.6__1724__AT5G17260.1 I 0.000
anac096 Arabidopsis thaliana AT5G46590 D 0.000
Aquca_002_01357 Aquilegia coerulea Aquca_002_01357 I 0.000
Aquca_002_01358 Aquilegia coerulea Aquca_002_01358 I 0.000
Aquca_044_00122 Aquilegia coerulea Aquca_044_00122 I 0.000
BGIOSGA011734 Oryza indica BGIOSGA011734 I 0.000
BGIOSGA031229 Oryza indica BGIOSGA031229 I 0.000
BGIOSGA031230 Oryza indica BGIOSGA031230 I 0.000
Bo1g154830 Brassica oleracea Bo1g154830 I 0.000
Bo2g052630 Brassica oleracea Bo2g052630 I 0.000
Bo3g012450 Brassica oleracea Bo3g012450 I 0.000
Bo3g185870 Brassica oleracea Bo3g185870 I 0.000
Bo5g122710 Brassica oleracea Bo5g122710 I 0.000
Bo5g150170 Brassica oleracea Bo5g150170 I 0.000
Bo6g036040 Brassica oleracea Bo6g036040 I 0.000
Bo9g161440 Brassica oleracea Bo9g161440 I 0.000
Bostr.19046s0031 Boechera stricta Bostr.19046s0031 I 0.000
Bostr.19424s0897 Boechera stricta Bostr.19424s0897 I 0.000
Bostr.2618s0061 Boechera stricta Bostr.2618s0061 I 0.000
Bostr.26959s0323 Boechera stricta Bostr.26959s0323 I 0.000
Bostr.6758s0078 Boechera stricta Bostr.6758s0078 I 0.000
Bra003335 Brassica rapa Bra003335 I 0.000
Bra006392 Brassica rapa Bra006392 I 0.000
Bra008567 Brassica rapa Bra008567 I 0.000
Bra021366 Brassica rapa Bra021366 I 0.000
Bra022236 Brassica rapa Bra022236 I 0.000
Bra030807 Brassica rapa Bra030807 I 0.000
Bra032009 Brassica rapa Bra032009 I 0.000
Bra039745 Brassica rapa Bra039745 I 0.000
BRADI1G77217 Brachypodium distachyon BRADI1G77217 I 0.000
BRADI4G37327 Brachypodium distachyon BRADI4G37327 I 0.000
Cagra.11446s0003 Capsella grandiflora Cagra.11446s0003 I 0.000
Cagra.1310s0016 Capsella grandiflora Cagra.1310s0016 I 0.000
Cagra.1378s0012 Capsella grandiflora Cagra.1378s0012 I 0.000
Cagra.2098s0066 Capsella grandiflora Cagra.2098s0066 I 0.000
Cagra.4849s0008 Capsella grandiflora Cagra.4849s0008 I 0.000
Carubv10003869m.g Capsella rubella Carubv10003869m.g I 0.000
Carubv10012163m.g Capsella rubella Carubv10012163m.g I 0.000
Carubv10013584m.g Capsella rubella Carubv10013584m.g I 0.000
Carubv10014426m.g Capsella rubella Carubv10014426m.g I 0.000
Carubv10021788m.g Capsella rubella Carubv10021788m.g I 0.000
cassava20891.m1 Manihot esculenta cassava20891.m1 I 0.000
cassava30278.valid.m1 Manihot esculenta cassava30278.valid.m1 I 0.000
cassava38739.m1 Manihot esculenta cassava38739.m1 I 0.000
cassava4611.m1 Manihot esculenta cassava4611.m1 I 0.000
Ca_13258 Cicer arietinum Ca_13258 I 0.000
Ca_14390 Cicer arietinum Ca_14390 I 0.000
Ca_18034 Cicer arietinum Ca_18034 I 0.000
Ca_23537 Cicer arietinum Ca_23537 I 0.000
chr2.CM0021.650.nc Lotus japonicus chr2.CM0021.650.nc I 0.000
Ciclev10005341m.g Citrus clementina Ciclev10005341m.g I 0.000
Ciclev10011293m.g Citrus clementina Ciclev10011293m.g I 0.000
Ciclev10024520m.g Citrus clementina Ciclev10024520m.g I 0.000
Cla009281 Citrullus lanatus Cla009281 I 0.000
Cla013653 Citrullus lanatus Cla013653 I 0.000
Cla018917 Citrullus lanatus Cla018917 I 0.000
Cucsa.112500 Cucumis sativus Cucsa.112500 I 0.000
Cucsa.118620 Cucumis sativus Cucsa.118620 I 0.000
Cucsa.173670 Cucumis sativus Cucsa.173670 I 0.000
Eucgr.F02910 Eucalyptus grandis Eucgr.F02910 I 0.000
Eucgr.H00614 Eucalyptus grandis Eucgr.H00614 I 0.000
Eucgr.K02303 Eucalyptus grandis Eucgr.K02303 I 0.000
evm.TU.contig_29561 Carica papaya evm.TU.contig_29561 I 0.000
evm.TU.supercontig_178.32 Carica papaya evm.TU.supercontig_178.32 I 0.000
evm.TU.supercontig_38.43 Carica papaya evm.TU.supercontig_38.43 I 0.000
F775_13960 Aegilops tauschii F775_13960 I 0.000
F775_13961 Aegilops tauschii F775_13961 I 0.000
F775_22879 Aegilops tauschii F775_22879 I 0.000
gene09293-v1.0-hybrid Fragaria vesca gene09293-v1.0-hybrid I 0.000
gene19716-v1.0-hybrid Fragaria vesca gene19716-v1.0-hybrid I 0.000
gene31658-v1.0-hybrid Fragaria vesca gene31658-v1.0-hybrid I 0.000
GLYMA02G40750 Glycine max GLYMA02G40750 I 0.000
GLYMA08G17351 Glycine max GLYMA08G17351 I 0.000
GLYMA09G29760 Glycine max GLYMA09G29760 I 0.000
GLYMA11G33210 Glycine max GLYMA11G33210 I 0.000
GLYMA14G39080 Glycine max GLYMA14G39080 I 0.000
GLYMA15G41825 Glycine max GLYMA15G41825 I 0.000
GLYMA16G34310 Glycine max GLYMA16G34310 I 0.000
GLYMA18G05020 Glycine max GLYMA18G05020 I 0.000
Gorai.001G070700 Gossypium raimondii Gorai.001G070700 I 0.000
Gorai.004G048200 Gossypium raimondii Gorai.004G048200 I 0.000
Gorai.004G268400 Gossypium raimondii Gorai.004G268400 I 0.000
Gorai.006G189600 Gossypium raimondii Gorai.006G189600 I 0.000
Gorai.007G188800 Gossypium raimondii Gorai.007G188800 I 0.000
Gorai.013G146300 Gossypium raimondii Gorai.013G146300 I 0.000
GRMZM2G174070 Zea mays GRMZM2G174070 I 0.000
GRMZM2G406204 Zea mays GRMZM2G406204 I 0.000
GSMUA_Achr11G01400_001 Musa acuminata GSMUA_Achr11G01400_001 I 0.000
GSMUA_Achr11G16860_001 Musa acuminata GSMUA_Achr11G16860_001 I 0.000
GSMUA_Achr1G02820_001 Musa acuminata GSMUA_Achr1G02820_001 I 0.000
GSMUA_Achr3G13880_001 Musa acuminata GSMUA_Achr3G13880_001 I 0.000
GSMUA_Achr8G13430_001 Musa acuminata GSMUA_Achr8G13430_001 I 0.000
GSMUA_Achr9G23940_001 Musa acuminata GSMUA_Achr9G23940_001 I 0.000
GSMUA_AchrUn_randomG08190_001 Musa acuminata GSMUA_AchrUn_randomG08190_001 I 0.000
LPERR03G01480 Leersia perrieri LPERR03G01480 I 0.000
LPERR09G14720 Leersia perrieri LPERR09G14720 I 0.000
LPERR09G14740 Leersia perrieri LPERR09G14740 I 0.000
Lus10007377.g Linum usitatissimum Lus10007377.g I 0.000
Lus10010959.g Linum usitatissimum Lus10010959.g I 0.000
Lus10020794.g Linum usitatissimum Lus10020794.g I 0.000
Lus10026373.g Linum usitatissimum Lus10026373.g I 0.000
Lus10042284.g Linum usitatissimum Lus10042284.g I 0.000
MDP0000199840 Malus domestica MDP0000199840 I 0.000
MDP0000204582 Malus domestica MDP0000204582 I 0.000
MDP0000276982 Malus domestica MDP0000276982 I 0.000
MDP0000387787 Malus domestica MDP0000387787 I 0.000
MDP0000520807 Malus domestica MDP0000520807 I 0.000
MDP0000656113 Malus domestica MDP0000656113 I 0.000
mgf009479m Mimulus guttatus mgf009479m I 0.000
mgf019012m Mimulus guttatus mgf019012m I 0.000
mgf025206m Mimulus guttatus mgf025206m I 0.000
MLOC_37843 Hordeum vulgare MLOC_37843 I 0.000
MLOC_37844 Hordeum vulgare MLOC_37844 I 0.000
MLOC_71128 Hordeum vulgare MLOC_71128 I 0.000
MTR_2g064090 Medicago truncatula MTR_2g064090 I 0.000
MTR_3g064580 Medicago truncatula MTR_3g064580 I 0.000
MTR_5g076850 Medicago truncatula MTR_5g076850 I 0.000
MTR_6g477900 Medicago truncatula MTR_6g477900 I 0.000
NAC045 Arabidopsis thaliana AT3G03200 D 0.000
NAC086 Arabidopsis thaliana AT5G17260 I 0.000
OB03G11530 Oryza brachyantha OB03G11530 I 0.000
OB09G25570 Oryza brachyantha OB09G25570 I 0.000
OB09G25590 Oryza brachyantha OB09G25590 I 0.000
OBART03G01580 Oryza barthii OBART03G01580 I 0.000
OGLUM03G01540 Oryza glumaepatula OGLUM03G01540 I 0.000
OGLUM09G19470 Oryza glumaepatula OGLUM09G19470 I 0.000
OGLUM09G19480 Oryza glumaepatula OGLUM09G19480 I 0.000
OLONG_013792 Oryza longistaminata OLONG_013792 I 0.000
OMERI03G01540 Oryza meridionalis OMERI03G01540 I 0.000
OMERI09G14160 Oryza meridionalis OMERI09G14160 I 0.000
OMERI09G14170 Oryza meridionalis OMERI09G14170 I 0.000
ONIVA09G11670 Oryza nivara ONIVA09G11670 I 0.000
ONIVA09G20110 Oryza nivara ONIVA09G20110 I 0.000
ONIVA09G20130 Oryza nivara ONIVA09G20130 I 0.000
OPUNC03G01460 Oryza punctata OPUNC03G01460 I 0.000
orange1.1g007938m.g Citrus sinensis orange1.1g007938m.g I 0.000
orange1.1g036998m.g Citrus sinensis orange1.1g036998m.g I 0.000
orange1.1g040617m.g Citrus sinensis orange1.1g040617m.g I 0.000
ORGLA03G0013500 Oryza glaberrima ORGLA03G0013500 I 0.000
ORGLA09G0151700 Oryza glaberrima ORGLA09G0151700 I 0.000
ORGLA09G0151800 Oryza glaberrima ORGLA09G0151800 I 0.000
ORUFI03G01320 Oryza rufipogon ORUFI03G01320 I 0.000
OS09G0552800 Oryza sativa OS09G0552800 I 0.000
Pavir.Ba01384 Panicum virgatum Pavir.Ba01384 I 0.000
Pavir.Ba01386 Panicum virgatum Pavir.Ba01386 I 0.000
Pavir.Bb02626 Panicum virgatum Pavir.Bb02626 I 0.000
Pavir.Bb02627 Panicum virgatum Pavir.Bb02627 I 0.000
Pavir.Ia04558 Panicum virgatum Pavir.Ia04558 I 0.000
Pavir.Ib00051 Panicum virgatum Pavir.Ib00051 I 0.000
PDK_20s1433691g002 Phoenix dactylifera PDK_20s1433691g002 I 0.000
PGSC0003DMG400021474 Solanum tuberosum PGSC0003DMG400021474 I 0.000
PGSC0003DMG400031054 Solanum tuberosum PGSC0003DMG400031054 I 0.000
PK03341.1 Cannabis sativa PK03341.1 I 0.000
PK19314.1 Cannabis sativa PK19314.1 D 0.000
PK26618.1 Cannabis sativa PK26618.1 D 0.000
Pm010926 Prunus mume Pm010926 I 0.000
Pm012993 Prunus mume Pm012993 I 0.000
POPTR_0004s07910 Populus trichocarpa POPTR_0004s07910 I 0.000
POPTR_0010s18180 Populus trichocarpa POPTR_0010s18180 I 0.000
POPTR_0015s05450 Populus trichocarpa POPTR_0015s05450 I 0.000
POPTR_0017s02020 Populus trichocarpa POPTR_0017s02020 I 0.000
PRUPE_ppa002384mg Prunus persica PRUPE_ppa002384mg I 0.000
PRUPE_ppa017765mg Prunus persica PRUPE_ppa017765mg I 0.000
SapurV1A.0074s0150 Salix purpurea SapurV1A.0074s0150 I 0.000
SapurV1A.0093s0260 Salix purpurea SapurV1A.0093s0260 I 0.000
SapurV1A.0147s0010 Salix purpurea SapurV1A.0147s0010 I 0.000
SapurV1A.0149s0500 Salix purpurea SapurV1A.0149s0500 I 0.000
SapurV1A.0202s0410 Salix purpurea SapurV1A.0202s0410 I 0.000
SapurV1A.0549s0150 Salix purpurea SapurV1A.0549s0150 I 0.000
SapurV1A.1584s0060 Salix purpurea SapurV1A.1584s0060 I 0.000
SapurV1A.2754s0020 Salix purpurea SapurV1A.2754s0020 I 0.000
Sb01g049240 Sorghum bicolor Sb01g049240 I 0.000
Sb02g032220 Sorghum bicolor Sb02g032220 I 0.000
Sb02g032230 Sorghum bicolor Sb02g032230 I 0.000
Si032702m.g Setaria italica Si032702m.g I 0.000
Si033085m.g Setaria italica Si033085m.g I 0.000
Si034541m.g Setaria italica Si034541m.g I 0.000
Solyc02g036430.1 Solanum lycopersicum Solyc02g036430.1 I 0.000
Solyc02g081270.2 Solanum lycopersicum Solyc02g081270.2 I 0.000
Solyc03g098190.2 Solanum lycopersicum Solyc03g098190.2 I 0.000
TCM_017681 Theobroma cacao TCM_017681 I 0.000
TCM_033629 Theobroma cacao TCM_033629 I 0.000
TCM_044911 Theobroma cacao TCM_044911 I 0.000
Thhalv10012158m.g Eutrema salsugineum Thhalv10012158m.g I 0.000
Thhalv10013344m.g Eutrema salsugineum Thhalv10013344m.g I 0.000
Thhalv10018275m.g Eutrema salsugineum Thhalv10018275m.g I 0.000
Thhalv10021408m.g Eutrema salsugineum Thhalv10021408m.g I 0.000
Thhalv10022055m.g Eutrema salsugineum Thhalv10022055m.g I 0.000
Thhalv10023058m.g Eutrema salsugineum Thhalv10023058m.g I 0.000
Thhalv10027064m.g Eutrema salsugineum Thhalv10027064m.g I 0.000
Traes_4BL_D592DBAAF Triticum aestivum Traes_4BL_D592DBAAF I 0.000
Traes_4DL_A13AE4BE6 Triticum aestivum Traes_4DL_A13AE4BE6 I 0.000
Traes_5AL_59A8F0CBD Triticum aestivum Traes_5AL_59A8F0CBD I 0.000
Traes_5BL_581C3F5DA Triticum aestivum Traes_5BL_581C3F5DA I 0.000
Traes_5BL_8BE382FE3 Triticum aestivum Traes_5BL_8BE382FE3 I 0.000
Traes_5DL_B69423A67 Triticum aestivum Traes_5DL_B69423A67 I 0.000
TRIUR3_13805 Triticum urartu TRIUR3_13805 I 0.000
TRIUR3_13806 Triticum urartu TRIUR3_13806 I 0.000
VIT_04s0079g00280 Vitis vinifera VIT_04s0079g00280 I 0.000