CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Aquca_016_00110
(
Aquilegia coerulea
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Aquca_016_00110
T228045_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
KNAT7
M01064_2.00
Arabidopsis thaliana
TGACRKST
ASMYGTCA
PBM
Sullivan et al.(2014)
pTH9798
0.865
0.872
KNAT3
M02051_2.00
Arabidopsis thaliana
NNNGACVBNN
NNVBGTCNNN
PBM
Weirauch et al.(2014)
pTH7600
0.863
0.979
KNAT4
M01238_2.00
Arabidopsis thaliana
NNGACNNNN
NNNNGTCNN
PBM
Lambert et al.(2019)
pTH9968
0.863
0.957
HOS66
M02156_2.00
Oryza sativa
NNNNDHNN
NNDHNNNN
PBM
Weirauch et al.(2014)
pTH8332
0.826
0.872
Q5EVH4_OIKDI
M02227_2.00
Oikopleura dioica
NTGACAKN
NMTGTCAN
PBM
Weirauch et al.(2014)
pTH6041
0.721
0.489
MEIS3
M03093_2.00
Homo sapiens
DTGACANN
NNTGTCAH
SELEX
Jolma et al.(2013)
MEIS3_1
0.667
0.468
MEIS3
M03094_2.00
Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA
SELEX
Jolma et al.(2013)
MEIS3_2
0.667
0.468
MEIS3
M04951_2.00
Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA
SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX
0.667
0.468
MEIS3
M04952_2.00
Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR
SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX
0.667
0.468
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Aquca_016_00110.1
Homeodomain
328
377
DTTSHLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW
Aquca_016_00110.2
Homeodomain
328
377
DTTSHLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW
Aquca_016_00110.3
Homeodomain
328
377
DTTSHLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW
Aquca_016_00110.4
Homeodomain
328
377
DTTSHLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW
Links
Other
Homeodomain
family TFs
Other
Aquilegia coerulea
TFs
513 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy