Bostr.26833s0878 (Boechera stricta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Bostr.26833s0878 T228131_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.709 0.596
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.709 0.596
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.689 0.579
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.689 0.579
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.652 0.544
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.652 0.544
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.652 0.544
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.648 0.526
ATHB-12
M00865_2.00 		Arabidopsis thaliana
NNNNNNNN
NNNNNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATHB12 		0.603 0.526
ATHB-12
M02045_2.00 		Arabidopsis thaliana
BHWWWWWWDV
BHWWWWWWDV		 PBM
Weirauch et al.(2014)
pTH7207 		0.603 0.526
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.26833s0878.1.p Homeodomain 11 67

Links

Other Homeodomain family TFs
Other Boechera stricta TFs

186 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.850
Bo2g042250 Brassica oleracea Bo2g042250 I 0.846
Bra022687 Brassica rapa Bra022687 I 0.846
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.835
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.835
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.835
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.815
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.741
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.730
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.730
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.728
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.728
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.715
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.713
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.713
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.713
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.711
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.711
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.711
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.711
Bo2g012410 Brassica oleracea Bo2g012410 I 0.711
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.711
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.711
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.711
HAT7 Arabidopsis thaliana AT5G15150 I 0.711
Bra023506 Brassica rapa Bra023506 I 0.711
Bo3g010120 Brassica oleracea Bo3g010120 I 0.711
Bra006285 Brassica rapa Bra006285 I 0.711
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.709
Ca_10527 Cicer arietinum Ca_10527 I 0.709
PK20392.1 Cannabis sativa PK20392.1 D 0.709
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.709
Cla010510 Citrullus lanatus Cla010510 I 0.709
TCM_018470 Theobroma cacao TCM_018470 I 0.709
Pm015861 Prunus mume Pm015861 I 0.709
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.709
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.709
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.709
29822.m003500 Ricinus communis 29822.m003500 I 0.709
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.709
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.709
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.709
MDP0000124827 Malus domestica MDP0000124827 I 0.709
Bra008717 Brassica rapa Bra008717 I 0.709
MDP0000737128 Malus domestica MDP0000737128 I 0.709
Bo9g165360 Brassica oleracea Bo9g165360 I 0.709
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.709
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.709
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.709
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.709
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.709
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.709
mgf013301m Mimulus guttatus mgf013301m I 0.708
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.707
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.707
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.704
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.704
Bo12274s010 Brassica oleracea Bo12274s010 I 0.702
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.701
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.701
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.700
TCM_031644 Theobroma cacao TCM_031644 I 0.699
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.698
MDP0000146339 Malus domestica MDP0000146339 I 0.695
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.695
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.694
Pm011328 Prunus mume Pm011328 I 0.693
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.693
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.693
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.692
MDP0000909160 Malus domestica MDP0000909160 I 0.690
Bo1g158730 Brassica oleracea Bo1g158730 I 0.689
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.689
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.689
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.689
Bra039135 Brassica rapa Bra039135 I 0.689
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.689
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.689
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.689
Cla018641 Citrullus lanatus Cla018641 I 0.687
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.687
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.687
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.686
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.684
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.682
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.680
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.672
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.670
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.666
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.661
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.661
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.661
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.661
MDP0000119544 Malus domestica MDP0000119544 I 0.661
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.661
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.661
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.661
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.661
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.661
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.661
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.661
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.661
MDP0000134241 Malus domestica MDP0000134241 I 0.661
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.661
TCM_022391 Theobroma cacao TCM_022391 I 0.661
MDP0000738604 Malus domestica MDP0000738604 I 0.661
Cla018017 Citrullus lanatus Cla018017 I 0.661
29815.m000499 Ricinus communis 29815.m000499 I 0.661
PK15535.1 Cannabis sativa PK15535.1 I 0.661
Pm026270 Prunus mume Pm026270 I 0.661
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.660
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.660
mgf022748m Mimulus guttatus mgf022748m I 0.660
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.659
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.655
mgf019824m Mimulus guttatus mgf019824m I 0.653
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.653
Bo2g005230 Brassica oleracea Bo2g005230 I 0.652
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.652
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.652
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.652
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.652
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.652
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.652
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.652
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.652
Bra009510 Brassica rapa Bra009510 I 0.652
Bo9g181720 Brassica oleracea Bo9g181720 I 0.652
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.652
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.652
Bo3g002560 Brassica oleracea Bo3g002560 I 0.652
Bra028820 Brassica rapa Bra028820 I 0.652
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.652
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.650
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.648
Bra005259 Brassica rapa Bra005259 I 0.648
Bo4g034490 Brassica oleracea Bo4g034490 I 0.648
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.648
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.648
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.648
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.646
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.644
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.644
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.644
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.644
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.644
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.644
Si030983m.g Setaria italica Si030983m.g I 0.644
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.643
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.639
Pm018314 Prunus mume Pm018314 I 0.639
GLYMA12G18720 Glycine max GLYMA12G18720 I 0.636
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.634
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.633
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.628
Bra018155 Brassica rapa Bra018155 I 0.626
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.625
mgf025174m Mimulus guttatus mgf025174m I 0.622
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.620
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.618
Ca_00750 Cicer arietinum Ca_00750 I 0.617
MTR_7g103340 Medicago truncatula MTR_7g103340 I 0.617
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.616
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.611
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.611
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.610
GLYMA03G34710 Glycine max GLYMA03G34710 I 0.608
Ca_20151 Cicer arietinum Ca_20151 I 0.608
Solyc03g034120.2 Solanum lycopersicum Solyc03g034120.2 I 0.608
M408DRAFT_332781 Serendipita vermifera M408DRAFT_332781 I 0.606
MDP0000311522 Malus domestica MDP0000311522 I 0.606
Gorai.007G235200 Gossypium raimondii Gorai.007G235200 I 0.605
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.604
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.604
ATHB-12 Arabidopsis thaliana AT3G61890 D 0.603
mgf005976m Mimulus guttatus mgf005976m I 0.603
Bra007637 Brassica rapa Bra007637 I 0.603
ATHB-12 Arabidopsis lyrata fgenesh2_kg.5__2686__AT3G61890.1 I 0.603
Bo8g097390 Brassica oleracea Bo8g097390 I 0.603
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.601
29983.m003123 Ricinus communis 29983.m003123 I 0.601
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.601
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.601
Ciclev10022253m.g Citrus clementina Ciclev10022253m.g I 0.600
orange1.1g027468m.g Citrus sinensis orange1.1g027468m.g I 0.600
Si017789m.g Setaria italica Si017789m.g I 0.599