Carubv10003464m.g (Capsella rubella)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Carubv10003464m.g T228279_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATHB-51
M00867_2.00
Arabidopsis thaliana
ATWATKNN

NNMATWAT
PBM
Franco-Zorrilla et al.(2014)
ATHB51
0.780 0.825
ATHB-51
M06927_2.00
Arabidopsis thaliana
DNCAATAATTGAD

HTCAATTATTGNH
Dap-seq
OMalley et al.(2016)
LMI1_col_a
0.780 0.825
ATHB-51
M06928_2.00
Arabidopsis thaliana
NDNCAATAATTGA

TCAATTATTGNHN
Dap-seq
OMalley et al.(2016)
LMI1_colamp_a
0.780 0.825
ATHB-22
M02041_2.00
Arabidopsis thaliana
NNATAATWWWNNN

NNNWWWATTATNN
PBM
Weirauch et al.(2014)
pTH5883
0.747 0.702
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.679 0.596
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.679 0.596
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD

HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.659 0.579
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD

HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.659 0.579
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10003464m Homeodomain 34 90

Links

Other Homeodomain family TFs
Other Capsella rubella TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.825
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.811
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.796
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.789
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.789
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.789
Bo9g181720 Brassica oleracea Bo9g181720 I 0.780
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.780
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.780
Bra009510 Brassica rapa Bra009510 I 0.780
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.780
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.780
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.780
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.780
Bo3g002560 Brassica oleracea Bo3g002560 I 0.776
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.774
29815.m000499 Ricinus communis 29815.m000499 I 0.769
Cla018017 Citrullus lanatus Cla018017 I 0.769
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.769
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.769
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.769
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.769
MDP0000119544 Malus domestica MDP0000119544 I 0.768
MDP0000134241 Malus domestica MDP0000134241 I 0.768
MDP0000738604 Malus domestica MDP0000738604 I 0.768
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.768
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.768
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.765
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.765
TCM_022391 Theobroma cacao TCM_022391 I 0.765
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.765
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.765
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.765
Pm026270 Prunus mume Pm026270 I 0.765
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.765
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.765
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.765
mgf022748m Mimulus guttatus mgf022748m I 0.764
Bra028820 Brassica rapa Bra028820 I 0.764
Bo2g005230 Brassica oleracea Bo2g005230 I 0.764
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.764
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.761
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.761
Cla018641 Citrullus lanatus Cla018641 I 0.761
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.759
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.759
mgf019824m Mimulus guttatus mgf019824m I 0.757
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.756
PK15535.1 Cannabis sativa PK15535.1 I 0.754
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.754
Bra005259 Brassica rapa Bra005259 I 0.748
Bo4g034490 Brassica oleracea Bo4g034490 I 0.748
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.747
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I 0.744
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I 0.742
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.736
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.731
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.707
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.705
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.705
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.705
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.705
Si030983m.g Setaria italica Si030983m.g I 0.705
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.705
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.705
Pm018314 Prunus mume Pm018314 I 0.699
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.699
Cagra.0154s0024 Capsella grandiflora Cagra.0154s0024 I 0.697
Carubv10002831m.g Capsella rubella Carubv10002831m.g I 0.695
Ca_20151 Cicer arietinum Ca_20151 I 0.689
29983.m003123 Ricinus communis 29983.m003123 I 0.687
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.686
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.679
MDP0000737128 Malus domestica MDP0000737128 I 0.679
PK20392.1 Cannabis sativa PK20392.1 D 0.679
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.679
MDP0000124827 Malus domestica MDP0000124827 I 0.679
29822.m003500 Ricinus communis 29822.m003500 I 0.679
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.679
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.679
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.679
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.679
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.679
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.679
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.679
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.679
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.679
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.679
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.679
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.679
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.679
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.679
Pm015861 Prunus mume Pm015861 I 0.679
Bra023506 Brassica rapa Bra023506 I 0.679
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.679
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.679
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.679
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.679
Bra006285 Brassica rapa Bra006285 I 0.679
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.679
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.679
Bo9g165360 Brassica oleracea Bo9g165360 I 0.679
Bo3g010120 Brassica oleracea Bo3g010120 I 0.679
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.679
Bo2g012410 Brassica oleracea Bo2g012410 I 0.679
Bra008717 Brassica rapa Bra008717 I 0.679
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.679
Ca_10527 Cicer arietinum Ca_10527 I 0.679
Cla010510 Citrullus lanatus Cla010510 I 0.679
HAT7 Arabidopsis thaliana AT5G15150 I 0.679
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.679
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.679
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.679
TCM_018470 Theobroma cacao TCM_018470 I 0.679
Bo9g181710 Brassica oleracea Bo9g181710 I 0.678
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.677
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.673
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.673
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.671
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.670
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.670
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.669
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.668
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.668
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.666
MDP0000311522 Malus domestica MDP0000311522 I 0.666
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.665
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.665
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.665
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.661
Bra039135 Brassica rapa Bra039135 I 0.659
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.659
Bo1g158730 Brassica oleracea Bo1g158730 I 0.659
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.659
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.659
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.659
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.659
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.659
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.659
Bo12274s010 Brassica oleracea Bo12274s010 I 0.655
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.652
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.652
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.652
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.652
Bra022687 Brassica rapa Bra022687 I 0.652
Bo2g042250 Brassica oleracea Bo2g042250 I 0.652
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.652
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.652
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.652
MTR_7g103340 Medicago truncatula MTR_7g103340 I 0.648
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.647
MDP0000316497 Malus domestica MDP0000316497 I 0.646
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.646
Ca_17608 Cicer arietinum Ca_17608 I 0.646
MTR_8g026960 Medicago truncatula MTR_8g026960 I 0.646
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.646
Ca_00750 Cicer arietinum Ca_00750 I 0.644
GLYMA19G37380 Glycine max GLYMA19G37380 I 0.644
GLYMA03G34710 Glycine max GLYMA03G34710 I 0.644
Solyc03g034120.2 Solanum lycopersicum Solyc03g034120.2 I 0.633
Pm011328 Prunus mume Pm011328 I 0.626
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.626
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.626
mgf013301m Mimulus guttatus mgf013301m I 0.626
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.626
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.626
TCM_031644 Theobroma cacao TCM_031644 I 0.626
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.626
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.626
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.626
POPTR_0007s01370 Populus trichocarpa POPTR_0007s01370 I 0.625
MDP0000146339 Malus domestica MDP0000146339 I 0.624
MDP0000909160 Malus domestica MDP0000909160 I 0.624
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.623
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.623
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.616
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.615
Solyc03g034110.2 Solanum lycopersicum Solyc03g034110.2 I 0.611
PGSC0003DMG400017775 Solanum tuberosum PGSC0003DMG400017775 I 0.611
PGSC0003DMG400017787 Solanum tuberosum PGSC0003DMG400017787 I 0.611
PGSC0003DMG400017776 Solanum tuberosum PGSC0003DMG400017776 I 0.611
Gorai.007G206000 Gossypium raimondii Gorai.007G206000 I 0.607
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.605
Solyc03g034130.2 Solanum lycopersicum Solyc03g034130.2 I 0.605
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.603
fgenesh1_pg.scaffold_143000038 Physcomitrella patens fgenesh1_pg.scaffold_143000038 I 0.602
GLYMA13G23890 Glycine max GLYMA13G23890 I 0.599