CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10004029m.g
(
Capsella rubella
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Carubv10004029m.g
T228282_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10004029m
Homeodomain
2
55
KRKSPEQVQALEAFYLAEKMYPTSREMEDLGKSLGLTVKEVSGWFKRRRSRGKG
Carubv10004030m
Homeodomain
2
54
KRKSPEQVQALEAFYLEKMYPTSREMEDLGKSLGLTVKEVSGWFKRRRSRGKG
Links
Other
Homeodomain
family TFs
Other
Capsella rubella
TFs
5 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.1329s0011
Capsella grandiflora
Cagra.1329s0011
N
0.867
Bostr.2021s0009
Boechera stricta
Bostr.2021s0009
N
0.824
AT4G12750
Arabidopsis thaliana
AT4G12750
N
0.803
Thhalv10024262m.g
Eutrema salsugineum
Thhalv10024262m.g
N
0.711