Carubv10010076m.g (Capsella rubella)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Carubv10010076m.g T228303_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATHB-13
M06900_2.00
Arabidopsis thaliana
HYAATAATTDD

HHAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB13_col_a
0.796 0.893
ATHB-13
M06901_2.00
Arabidopsis thaliana
NYAATAATTRW

WYAATTATTRN
Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a
0.796 0.893
estExt_gwp_gw1.C_70211
M02220_2.00
Physcomitrella patens
HMATNANDNN

NNHNTNATKD
PBM
Weirauch et al.(2014)
pTH8489
0.757 0.696
ATHB-5
M06932_2.00
Arabidopsis thaliana
NYAATMATTND

HNAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_col_a
0.744 0.750
ATHB-5
M06933_2.00
Arabidopsis thaliana
NYAATMATTN

NAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a
0.744 0.750
ATHB-5
M02684_2.00
Arabidopsis thaliana
CAATVATTGVVSV

BSBBCAATBATTG
SELEX
Mathelier et al.(2014)
MA0110.2
0.744 0.750
ATHB-5
M10630_2.00
Arabidopsis thaliana
CAATVATTG

CAATBATTG
Transfac
Matys et al.(2006)
P$ATHB5_01
0.744 0.750
ATHB-6
M02040_2.00
Arabidopsis thaliana
HATNATTDN

NHAATNATD
PBM
Weirauch et al.(2014)
pTH7670
0.731 0.732
ATHB-16
M02050_2.00
Arabidopsis thaliana
YAATMATT

AATKATTR
PBM
Weirauch et al.(2014)
pTH7270
0.731 0.732
ATHB-6
M06909_2.00
Arabidopsis thaliana
NNNHATKATTR

YAATMATDNNN
Dap-seq
OMalley et al.(2016)
ATHB6_col_a
0.731 0.732
ATHB-6
M06910_2.00
Arabidopsis thaliana
NCAATAATTRN

NYAATTATTGN
Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a
0.731 0.732
HAT5
M06914_2.00
Arabidopsis thaliana
NHAATAATTDW

WHAATTATTDN
Dap-seq
OMalley et al.(2016)
HAT5_col_a
0.725 0.696
HAT5
M06915_2.00
Arabidopsis thaliana
WNYAATAATTRWDN

NHWYAATTATTRNW
Dap-seq
OMalley et al.(2016)
HAT5_colamp_a
0.725 0.696
HAT5
M02683_2.00
Arabidopsis thaliana
SCAATAATTNNV

BNNAATTATTGS
SELEX
Mathelier et al.(2014)
MA0008.2
0.725 0.696
HAT5
M10624_2.00
Arabidopsis thaliana
YSCAATAATTNNVN

NBNNAATTATTGSR
Transfac
Matys et al.(2006)
P$ATHB1_01
0.725 0.696
ATHB-21
M06907_2.00
Arabidopsis thaliana
NNWHCAATWATTDN

NHAATWATTGDWNN
Dap-seq
OMalley et al.(2016)
ATHB21_col_a
0.686 0.589
ATHB-21
M06908_2.00
Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN

NNAHCAATWATTDNNNHHWW
Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a
0.686 0.589
HB-5
M06924_2.00
Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH

DWWDNNNHMAATWATTGDTNN
Dap-seq
OMalley et al.(2016)
ATHB40_col_a
0.685 0.571
HB-5
M06925_2.00
Arabidopsis thaliana
HHAATWATTGDWNN

NNWHCAATWATTDD
Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a
0.685 0.571
ATHB-53
M06934_2.00
Arabidopsis thaliana
HMAATAATTRD

HYAATTATTKD
Dap-seq
OMalley et al.(2016)
ATHB53_col_a
0.680 0.554
ATHB-53
M06935_2.00
Arabidopsis thaliana
NNWHCAATWATTDDN

NHHAATWATTGDWNN
Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a
0.680 0.554
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.649 0.786
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.649 0.786
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD

HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.633 0.768
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD

HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.633 0.768
ATHB-51
M00867_2.00
Arabidopsis thaliana
ATWATKNN

NNMATWAT
PBM
Franco-Zorrilla et al.(2014)
ATHB51
0.611 0.625
ATHB-51
M06927_2.00
Arabidopsis thaliana
DNCAATAATTGAD

HTCAATTATTGNH
Dap-seq
OMalley et al.(2016)
LMI1_col_a
0.611 0.625
ATHB-51
M06928_2.00
Arabidopsis thaliana
NDNCAATAATTGA

TCAATTATTGNHN
Dap-seq
OMalley et al.(2016)
LMI1_colamp_a
0.611 0.625
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10010076m Homeodomain 69 124

Links

Other Homeodomain family TFs
Other Capsella rubella TFs

814 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R004209 Calypte anna Aan_R004209 I 0.000
Aan_R011063 Calypte anna Aan_R011063 I 0.000
Afo_R012154 Aptenodytes forsteri Afo_R012154 I 0.000
Afo_R013359 Aptenodytes forsteri Afo_R013359 I 0.000
Alligator_sinensis_CCG004039.1 Alligator sinensis Alligator_sinensis_CCG004039.1 I 0.000
Brh_R001640 Buceros rhinoceros Brh_R001640 I 0.000
Brh_R004433 Buceros rhinoceros Brh_R004433 I 0.000
Cmyd_10017697 Chelonia mydas Cmyd_10017697 I 0.000
IRF1 Anolis carolinensis ENSACAG00000012699 I 0.000
ENSAMEG00000008380 Ailuropoda melanoleuca ENSAMEG00000008380 I 0.000
ENSAMXG00000005897 Astyanax mexicanus ENSAMXG00000005897 I 0.000
ENSAMXG00000010595 Astyanax mexicanus ENSAMXG00000010595 I 0.000
ENSAPLG00000009708 Anas platyrhynchos ENSAPLG00000009708 I 0.000
ENSAPLG00000015442 Anas platyrhynchos ENSAPLG00000015442 I 0.000
IRF2 Bos taurus ENSBTAG00000010002 I 0.000
IRF1 Bos taurus ENSBTAG00000031231 I 0.000
ENSBTAP00000013193-D1 Bos grunniens ENSBTAP00000013193-D1 I 0.000
IRF1 Canis familiaris ENSCAFG00000000851 I 0.000
IRF2 Canis familiaris ENSCAFG00000007761 I 0.000
IRF2 Choloepus hoffmanni ENSCHOG00000012067 I 0.000
IRF2 Callithrix jacchus ENSCJAG00000005731 I 0.000
IRF1 Callithrix jacchus ENSCJAG00000013013 I 0.000
IRF1 Cavia porcellus ENSCPOG00000004848 I 0.000
IRF2 Cavia porcellus ENSCPOG00000013097 I 0.000
ENSCSAG00000003010 Chlorocebus sabaeus ENSCSAG00000003010 I 0.000
ENSCSAG00000013810 Chlorocebus sabaeus ENSCSAG00000013810 I 0.000
irf2a Danio rerio ENSDARG00000007387 I 0.000
irf2 Danio rerio ENSDARG00000040465 I 0.000
txndc15 Danio rerio ENSDARG00000043249 I 0.000
IRF1 Dasypus novemcinctus ENSDNOG00000035479 I 0.000
ENSDORG00000003799 Dipodomys ordii ENSDORG00000003799 I 0.000
IRF2 Equus caballus ENSECAG00000007508 I 0.000
IRF1 Equus caballus ENSECAG00000017794 I 0.000
IRF1 Erinaceus europaeus ENSEEUG00000013362 I 0.000
ENSFALG00000011727 Ficedula albicollis ENSFALG00000011727 I 0.000
ENSFALG00000013442 Ficedula albicollis ENSFALG00000013442 I 0.000
IRF1 Felis catus ENSFCAG00000013318 I 0.000
IRF2 Felis catus ENSFCAG00000030144 I 0.000
IRF1 Homo sapiens ENSG00000125347 D 0.000
IRF2 Homo sapiens ENSG00000168310 D 0.000
irf2 Gasterosteus aculeatus ENSGACG00000018763 I 0.000
IRF1 Gallus gallus ENSGALG00000006785 I 0.000
IRF2 Gallus gallus ENSGALG00000010642 I 0.000
IRF1 Gorilla gorilla ENSGGOG00000013927 I 0.000
IRF2 Gorilla gorilla ENSGGOG00000016559 I 0.000
ENSGMOG00000016692 Gadus morhua ENSGMOG00000016692 I 0.000
ENSLACG00000001546 Latimeria chalumnae ENSLACG00000001546 I 0.000
ENSLACG00000004013 Latimeria chalumnae ENSLACG00000004013 I 0.000
IRF2 Loxodonta africana ENSLAFG00000000088 I 0.000
IRF1 Loxodonta africana ENSLAFG00000007502 I 0.000
ENSLOCG00000010331 Lepisosteus oculatus ENSLOCG00000010331 I 0.000
ENSLOCG00000013738 Lepisosteus oculatus ENSLOCG00000013738 I 0.000
ENSMEUG00000003128 Macropus eugenii ENSMEUG00000003128 I 0.000
ENSMEUG00000011152 Macropus eugenii ENSMEUG00000011152 I 0.000
IRF2 Meleagris gallopavo ENSMGAG00000006359 I 0.000
IRF1 Meleagris gallopavo ENSMGAG00000008932 I 0.000
IRF1 Microcebus murinus ENSMICG00000008190 I 0.000
IRF2 Microcebus murinus ENSMICG00000015506 I 0.000
IRF2 Myotis lucifugus ENSMLUG00000014246 I 0.000
IRF1 Myotis lucifugus ENSMLUG00000016545 I 0.000
IRF1 Macaca mulatta ENSMMUG00000008100 I 0.000
IRF2 Macaca mulatta ENSMMUG00000015087 I 0.000
IRF2 Monodelphis domestica ENSMODG00000004393 I 0.000
IRF1 Monodelphis domestica ENSMODG00000013963 I 0.000
ENSMPUG00000010522 Mustela putorius furo ENSMPUG00000010522 I 0.000
ENSMPUG00000011075 Mustela putorius furo ENSMPUG00000011075 I 0.000
Irf1 Mus musculus ENSMUSG00000018899 D 0.000
Irf2 Mus musculus ENSMUSG00000031627 D 0.000
ENSNLEG00000010848 Nomascus leucogenys ENSNLEG00000010848 I 0.000
ENSNLEG00000012720 Nomascus leucogenys ENSNLEG00000012720 I 0.000
IRF1 Ornithorhynchus anatinus ENSOANG00000010695 I 0.000
ENSOARG00000007443 Ovis aries ENSOARG00000007443 I 0.000
ENSOARG00000015078 Ovis aries ENSOARG00000015078 I 0.000
IRF1 Oryctolagus cuniculus ENSOCUG00000004165 I 0.000
IRF2 Oryctolagus cuniculus ENSOCUG00000009229 I 0.000
IRF2 Otolemur garnettii ENSOGAG00000010966 I 0.000
IRF1 Otolemur garnettii ENSOGAG00000015489 I 0.000
ENSONIG00000015919 Oreochromis niloticus ENSONIG00000015919 I 0.000
ENSONIG00000017217 Oreochromis niloticus ENSONIG00000017217 I 0.000
IRF2 Ochotona princeps ENSOPRG00000005398 I 0.000
irf2 Oryzias latipes ENSORLG00000008574 I 0.000
ENSP00000377218 Macaca fascicularis ENSP00000377218 I 0.000
ENSP00000384406 Macaca fascicularis ENSP00000384406 I 0.000
ENSP00000384406-D1 Bos grunniens ENSP00000384406-D1 I 0.000
ENSPANG00000014875 Papio anubis ENSPANG00000014875 I 0.000
IRF1 Procavia capensis ENSPCAG00000017088 I 0.000
ENSPFOG00000006505 Poecilia formosa ENSPFOG00000006505 I 0.000
ENSPPYG00000015762 Pongo abelii ENSPPYG00000015762 I 0.000
ENSPSIG00000010399 Pelodiscus sinensis ENSPSIG00000010399 I 0.000
ENSPSIG00000016830 Pelodiscus sinensis ENSPSIG00000016830 I 0.000
IRF2 Pan troglodytes ENSPTRG00000016639 I 0.000
IRF1 Pan troglodytes ENSPTRG00000017216 I 0.000
IRF1 Pteropus vampyrus ENSPVAG00000000430 I 0.000
IRF2 Pteropus vampyrus ENSPVAG00000007078 I 0.000
Irf1 Rattus norvegicus ENSRNOG00000008144 I 0.000
Irf2 Rattus norvegicus ENSRNOG00000009824 I 0.000
IRF1 Sorex araneus ENSSARG00000006226 I 0.000
ENSSHAG00000002124 Sarcophilus harrisii ENSSHAG00000002124 I 0.000
ENSSHAG00000009209 Sarcophilus harrisii ENSSHAG00000009209 I 0.000
IRF1 Sus scrofa ENSSSCG00000014277 I 0.000
IRF2 Sus scrofa ENSSSCG00000015782 I 0.000
ENSSTOG00000009857 Ictidomys tridecemlineatus ENSSTOG00000009857 I 0.000
IRF1 Taeniopygia guttata ENSTGUG00000001375 I 0.000
IRF2 Taeniopygia guttata ENSTGUG00000006662 I 0.000
irf2 Takifugu rubripes ENSTRUG00000001842 I 0.000
ENSTSYG00000001107 Tarsius syrichta ENSTSYG00000001107 I 0.000
ENSTSYG00000003453 Tarsius syrichta ENSTSYG00000003453 I 0.000
IRF1 Tursiops truncatus ENSTTRG00000002597 I 0.000
IRF2 Tursiops truncatus ENSTTRG00000009391 I 0.000
IRF2 Vicugna pacos ENSVPAG00000011297 I 0.000
ENSXMAG00000004071 Xiphophorus maculatus ENSXMAG00000004071 I 0.000
ENSXMAG00000011087 Xiphophorus maculatus ENSXMAG00000011087 I 0.000
Gfo_R010481 Geospiza fortis Gfo_R010481 I 0.000
Gfo_R013143 Geospiza fortis Gfo_R013143 I 0.000
Myotis_brandtii_IRF1_10032556 Myotis brandtii Myotis_brandtii_IRF1_10032556 I 0.000
Myotis_brandtii_IRF2_10027054 Myotis brandtii Myotis_brandtii_IRF2_10027054 I 0.000
Ogr17358 Ophisaurus gracilis Ogr17358 I 0.000
Pvit_12337 Pogona vitticeps Pvit_12337 I 0.000
Pvit_14395 Pogona vitticeps Pvit_14395 I 0.000
Tal_R004238 Tyto alba Tal_R004238 I 0.000
Tal_R005926 Tyto alba Tal_R005926 I 0.000
irf2.S Xenopus laevis XB-GENE-17339545 I 0.000
irf1.S Xenopus laevis XB-GENE-17345840 I 0.000
irf1.L Xenopus laevis XB-GENE-6255163 I 0.000
irf2 Xenopus tropicalis XB-GENE-942910 I 0.000
irf2.L Xenopus laevis XB-GENE-942916 I 0.000
irf1 Xenopus tropicalis XB-GENE-942994 I 0.000