Carubv10017952m.g (Capsella rubella)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Carubv10017952m.g T228324_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATHB-12
M00865_2.00
Arabidopsis thaliana
NNNNNNNN

NNNNNNNN
PBM
Franco-Zorrilla et al.(2014)
ATHB12
0.834 0.982
ATHB-12
M02045_2.00
Arabidopsis thaliana
BHWWWWWWDV

BHWWWWWWDV
PBM
Weirauch et al.(2014)
pTH7207
0.834 0.982
ATHB-7
M02043_2.00
Arabidopsis thaliana
NHWTGATTGN

NCAATCAWDN
PBM
Weirauch et al.(2014)
pTH8090
0.633 0.860
ATHB-7
M06911_2.00
Arabidopsis thaliana
NHYCAATCATTSW

WSAATGATTGRDN
Dap-seq
OMalley et al.(2016)
ATHB7_col_a
0.633 0.860
Q39944_HELAN
M10802_2.00
Helianthus annuus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HAHB4_01
0.630 0.579
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.618 0.614
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.618 0.614
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10017952m Homeodomain 29 85

Links

Other Homeodomain family TFs
Other Capsella rubella TFs

104 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29822.m003500 Ricinus communis 29822.m003500 I 0.618
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.603
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.631
ATHB-7 Arabidopsis thaliana AT2G46680 D 0.633
ATHB-12 Arabidopsis thaliana AT3G61890 D 0.834
HAT7 Arabidopsis thaliana AT5G15150 I 0.617
Bo2g012410 Brassica oleracea Bo2g012410 I 0.617
Bo3g010120 Brassica oleracea Bo3g010120 I 0.617
Bo4g007060 Brassica oleracea Bo4g007060 I 0.627
Bo4g100070 Brassica oleracea Bo4g100070 I 0.691
Bo8g097390 Brassica oleracea Bo8g097390 I 0.834
Bo9g165360 Brassica oleracea Bo9g165360 I 0.617
Bostr.13158s0194 Boechera stricta Bostr.13158s0194 I 0.867
Bostr.25993s0098 Boechera stricta Bostr.25993s0098 I 0.633
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.617
Bra004516 Brassica rapa Bra004516 I 0.627
Bra006285 Brassica rapa Bra006285 I 0.617
Bra007637 Brassica rapa Bra007637 I 0.834
Bra008717 Brassica rapa Bra008717 I 0.617
Bra014417 Brassica rapa Bra014417 I 0.676
Bra023506 Brassica rapa Bra023506 I 0.617
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.675
Cagra.0050s0032 Capsella grandiflora Cagra.0050s0032 I 0.633
Cagra.0483s0055 Capsella grandiflora Cagra.0483s0055 I 0.867
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.617
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.617
Carubv10023896m.g Capsella rubella Carubv10023896m.g I 0.633
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.618
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.618
Ca_10527 Cicer arietinum Ca_10527 I 0.618
Ca_17608 Cicer arietinum Ca_17608 I 0.683
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.618
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.618
Cla010510 Citrullus lanatus Cla010510 I 0.618
Cla018641 Citrullus lanatus Cla018641 I 0.609
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.609
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.618
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.643
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.618
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.618
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.618
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.620
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.617
ATHB-12 Arabidopsis lyrata fgenesh2_kg.5__2686__AT3G61890.1 I 0.834
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.681
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.618
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.628
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.618
GLYMA12G18720 Glycine max GLYMA12G18720 I 0.608
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.618
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.618
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.632
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.618
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.626
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.679
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.617
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.617
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.623
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.609
MDP0000124827 Malus domestica MDP0000124827 I 0.618
MDP0000146339 Malus domestica MDP0000146339 I 0.604
MDP0000311522 Malus domestica MDP0000311522 I 0.648
MDP0000316497 Malus domestica MDP0000316497 I 0.680
MDP0000737128 Malus domestica MDP0000737128 I 0.618
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.626
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.618
MTR_8g026960 Medicago truncatula MTR_8g026960 I 0.683
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.618
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.679
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.679
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.622
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.630
PK03912.1 Cannabis sativa PK03912.1 I 0.648
PK20392.1 Cannabis sativa PK20392.1 D 0.618
Pm011328 Prunus mume Pm011328 I 0.604
Pm015861 Prunus mume Pm015861 I 0.618
Pm018314 Prunus mume Pm018314 I 0.712
Pm019693 Prunus mume Pm019693 I 0.642
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.604
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.631
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.618
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.712
PRUPE_ppa011221mg Prunus persica PRUPE_ppa011221mg I 0.642
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.604
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.618
Q39944_HELAN Helianthus annuus Q39944_HELAN D 0.630
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.604
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.618
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.618
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.679
scaffold_403638.1 Arabidopsis lyrata scaffold_403638.1 I 0.633
scaffold_403640.1 Arabidopsis lyrata scaffold_403640.1 I 0.633
Si030983m.g Setaria italica Si030983m.g I 0.679
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.630
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.622
TCM_018470 Theobroma cacao TCM_018470 I 0.618
TCM_031644 Theobroma cacao TCM_031644 I 0.600
Thhalv10001600m.g Eutrema salsugineum Thhalv10001600m.g I 0.633
Thhalv10006221m.g Eutrema salsugineum Thhalv10006221m.g I 0.807
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.617
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.610
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.631
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.630
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.603