Carubv10023231m.g (Capsella rubella)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Carubv10023231m.g T228341_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATH1
M10627_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ATH1_01
0.795 0.694
Q5EVH4_OIKDI
M02227_2.00
Oikopleura dioica
NTGACAKN

NMTGTCAN
PBM
Weirauch et al.(2014)
pTH6041
0.638 0.571
MEIS3
M03093_2.00
Homo sapiens
DTGACANN

NNTGTCAH
SELEX
Jolma et al.(2013)
MEIS3_1
0.602 0.429
MEIS3
M03094_2.00
Homo sapiens
TGACAGSTGTCA

TGACASCTGTCA
SELEX
Jolma et al.(2013)
MEIS3_2
0.602 0.429
MEIS3
M04951_2.00
Homo sapiens
TGWCABVTGWCA

TGWCABVTGWCA
SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX
0.602 0.429
MEIS3
M04952_2.00
Homo sapiens
YGWCABVTGWCR

YGWCABVTGWCR
SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX
0.602 0.429
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10023231m Homeodomain 244 295

Links

Other Homeodomain family TFs
Other Capsella rubella TFs

1002 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSCPOG00000011858 Cavia porcellus ENSCPOG00000011858 N 0.000
ENSFALG00000011128 Ficedula albicollis ENSFALG00000011128 N 0.000
ENSOARG00000008729 Ovis aries ENSOARG00000008729 N 0.000
ENSPSIG00000018191 Pelodiscus sinensis ENSPSIG00000018191 N 0.000
ENSSHAG00000011534 Sarcophilus harrisii ENSSHAG00000011534 N 0.000
Myotis_brandtii_ZNF131_10029753 Myotis brandtii Myotis_brandtii_ZNF131_10029753 N 0.000
ZNF131 Monodelphis domestica ENSMODG00000020281 N 0.000
ZNF131 Oryctolagus cuniculus ENSOCUG00000017804 N 0.000
ZNF131 Felis catus ENSFCAG00000029728 N 0.000
ZNF131 Sorex araneus ENSSARG00000004599 N 0.000
ZNF131 Equus caballus ENSECAG00000019558 N 0.000
ZNF131 Tupaia belangeri ENSTBEG00000015451 N 0.000
ZNF131 Bos taurus ENSBTAG00000015504 N 0.000