Carubv10023690m.g (Capsella rubella)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Carubv10023690m.g T228344_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HAT22
M06926_2.00
Arabidopsis thaliana
NNYAATCATT

AATGATTRNN
Dap-seq
OMalley et al.(2016)
HAT22_col_a
0.861 0.895
HAT2
M06929_2.00
Arabidopsis thaliana
NHAATGATTRN

NYAATCATTDN
Dap-seq
OMalley et al.(2016)
HAT2_colamp_a
0.792 0.737
HAT2
M06930_2.00
Arabidopsis thaliana
WNYAATCATWD

HWATGATTRNW
Dap-seq
OMalley et al.(2016)
HAT2_col_v31
0.792 0.737
HAT1
M02047_2.00
Arabidopsis thaliana
NMATGATTRN

NYAATCATKN
PBM
Weirauch et al.(2014)
pTH8107
0.790 0.737
HAT1
M06922_2.00
Arabidopsis thaliana
NHAATGATTRNNWDW

WHWNNYAATCATTDN
Dap-seq
OMalley et al.(2016)
HAT1_col_a
0.790 0.737
HAT1
M06923_2.00
Arabidopsis thaliana
NYAATCATTDN

NHAATGATTRN
Dap-seq
OMalley et al.(2016)
HAT1_colamp_a
0.790 0.737
ATHB-X
M06902_2.00
Arabidopsis thaliana
HHAATRATTRN

NYAATYATTDD
Dap-seq
OMalley et al.(2016)
ATHB18_col_a
0.773 0.702
ATHB-X
M06903_2.00
Arabidopsis thaliana
NYAATGATTRV

BYAATCATTRN
Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a
0.773 0.702
HAT3
M00728_2.00
Arabidopsis thaliana
DTGATTRV

BYAATCAH
PBM
Chang et al.(2013)
pTH7400
0.764 0.789
ATHB-4
M01065_2.00
Arabidopsis thaliana
NBMTGCATRNN

NNYATGCAKVN
PBM
Sullivan et al.(2014)
pTH8184
0.764 0.772
ATHB-4
M02042_2.00
Arabidopsis thaliana
NNWTNATTRN

NYAATNAWNN
PBM
Weirauch et al.(2014)
pTH8667
0.764 0.772
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10023690m Homeodomain 143 199

Links

Other Homeodomain family TFs
Other Capsella rubella TFs

695 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
nAv.1.0.1.g04749 Acanthocheilonema viteae nAv.1.0.1.g04749 I 0.000
nAv.1.0.1.g00051 Acanthocheilonema viteae nAv.1.0.1.g00051 N 0.000
ACYPI001696 Acyrthosiphon pisum ACYPI001696 I 0.000
AAEL002769 Aedes aegypti AAEL002769 N 0.000
ANCCAN_23625 Ancylostoma caninum ANCCAN_23625 N 0.000
ANCCAN_23624 Ancylostoma caninum ANCCAN_23624 I 0.000
ANCCAN_24706 Ancylostoma caninum ANCCAN_24706 I 0.000
ANCCEY_02877 Ancylostoma ceylanicum ANCCEY_02877 I 0.000
ANCDUO_15205 Ancylostoma duodenale ANCDUO_15205 I 0.000
ANCDUO_20174 Ancylostoma duodenale ANCDUO_20174 I 0.000
ACOC_0000703501 Angiostrongylus costaricensis ACOC_0000703501 I 0.000
ASIM_0001696801 Anisakis simplex ASIM_0001696801 N 0.000
AARA009757 Anopheles arabiensis AARA009757 I 0.000
AATE019368 Anopheles atroparvus AATE019368 N 0.000
ACHR007729 Anopheles christyi ACHR007729 I 0.000
ACOM033416 Anopheles coluzzii ACOM033416 N 0.000
ACUA003826 Anopheles culicifacies ACUA003826 I 0.000
AEPI001687 Anopheles epiroticus AEPI001687 I 0.000
AFAF012033 Anopheles farauti AFAF012033 N 0.000
AGAP004052 Anopheles gambiae AGAP004052 N 0.000
AMEC020934 Anopheles melas AMEC020934 N 0.000
AMEM000031 Anopheles merus AMEM000031 N 0.000
AMIN002618 Anopheles minimus AMIN002618 I 0.000
ASTEI07078 Anopheles stephensi ASTEI07078 I 0.000
ASU_00242 Ascaris suum ASU_00242 I 0.000
Bm5024 Brugia malayi Bm5024 I 0.000
CBN10125 Caenorhabditis brenneri CBN10125 I 0.000
CBG22984 Caenorhabditis briggsae CBG22984 I 0.000
pros-1 Caenorhabditis elegans WBGene00000448 D 0.000
CJA12444 Caenorhabditis japonica CJA12444 I 0.000
CRE23850 Caenorhabditis remanei CRE23850 I 0.000
Cflo_00868--XP_392355.3_APIME Camponotus floridanus Cflo_00868--XP_392355.3_APIME I 0.000
CapteG2449 Capitella teleta CapteG2449 N 0.000
CGI_10022026 Crassostrea gigas CGI_10022026 N 0.000
CGOC_0000822101 Cylicostephanus goldi CGOC_0000822101 I 0.000
DAPPUDRAFT_290533 Daphnia pulex DAPPUDRAFT_290533 I 0.000
YQE_10516 Dendroctonus ponderosae YQE_10516 I 0.000
DICVIV_00921 Dictyocaulus viviparus DICVIV_00921 I 0.000
nDi.2.2.2.g11480 Dirofilaria immitis nDi.2.2.2.g11480 N 0.000
DME_0000841401 Dracunculus medinensis DME_0000841401 I 0.000
GL11998 Drosophila persimilis FBgn0149606 I 0.000
EVEC_0001110501 Enterobius vermicularis EVEC_0001110501 I 0.000
HCOI02128500 Haemonchus contortus HCOI02128500 I 0.000
Hba_13682 Heterorhabditis bacteriophora Hba_13682 N 0.000
ISCW008733 Ixodes scapularis ISCW008733 N 0.000
LDEC004085 Leptinotarsa decemlineata LDEC004085 N 0.000
nLs.2.1.2.g05095 Litomosoides sigmodontis nLs.2.1.2.g05095 I 0.000
nLs.2.1.2.g05094 Litomosoides sigmodontis nLs.2.1.2.g05094 N 0.000
LOAG_13494 Loa loa LOAG_13494 N 0.000
MCOS_0000195601 Mesocestoides corti MCOS_0000195601 I 0.000
NV15108 Nasonia vitripennis NV15108 N 0.000
NECAME_07738 Necator americanus NECAME_07738 I 0.000
NECAME_07739 Necator americanus NECAME_07739 I 0.000
NBR_0000066801 Nippostrongylus brasiliensis NBR_0000066801 I 0.000
nOo.2.0.1.g10265 Onchocerca ochengi nOo.2.0.1.g10265 I 0.000
WBGene00244521 Onchocerca volvulus WBGene00244521 I 0.000
PTRK_0001568700 Parastrongyloides trichosuri PTRK_0001568700 I 0.000
PHUM334550 Pediculus humanus PHUM334550 I 0.000
PPAI010076 Phlebotomus papatasi PPAI010076 I 0.000
RSKR_0000081800 Rhabditophanes kr3021 RSKR_0000081800 N 0.000
A_05794 Schistosoma haematobium A_05794 I 0.000
SBAD_0000068201 Soboliphyme baturini SBAD_0000068201 I 0.000
SINV18378 Solenopsis invicta SINV18378 I 0.000
L596_g9976 Steinernema carpocapsae L596_g9976 I 0.000
L889_g22574 Steinernema feltiae L889_g22574 I 0.000
L893_g28279 Steinernema glaseri L893_g28279 I 0.000
L898_g8569 Steinernema monticolum L898_g8569 I 0.000
L892_g25141 Steinernema scapterisci L892_g25141 I 0.000
SMAR007154 Strigamia maritima SMAR007154 N 0.000
SPAL_0001624500 Strongyloides papillosus SPAL_0001624500 I 0.000
SSTP_0000359900 Strongyloides stercoralis SSTP_0000359900 I 0.000
SVE_0442300 Strongyloides venezuelensis SVE_0442300 I 0.000
SVUK_0000405601 Strongylus vulgaris SVUK_0000405601 I 0.000
TELCIR_22329 Teladorsagia circumcincta TELCIR_22329 I 0.000
TELCIR_21732 Teladorsagia circumcincta TELCIR_21732 I 0.000
D917_07791 Trichinella nativa D917_07791 I 0.000
EFV53283 Trichinella spiralis EFV53283 I 0.000
TMUE_s0183000500 Trichuris muris TMUE_s0183000500 I 0.000
D918_02805 Trichuris suis D918_02805 I 0.000
TTRE_0000134301 Trichuris trichiura TTRE_0000134301 I 0.000
WUBG_10304 Wuchereria bancrofti WUBG_10304 N 0.000