Ciclev10001779m.g (Citrus clementina)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Ciclev10001779m.g T228364_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KNAT6
M02037_2.00 		Arabidopsis thaliana
NNWGACNNNN
NNNNGTCWNN		 PBM
Weirauch et al.(2014)
pTH7296 		0.765 0.754
KNOX3_HORVU
M10790_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$KNOX3_01 		0.748 0.684
GRMZM2G135447
M02139_2.00 		Zea mays
DTGACRKS
SMYGTCAH		 PBM
Weirauch et al.(2014)
pTH6328 		0.716 0.667
GRMZM2G087741
M02138_2.00 		Zea mays
NNTGACRKCN
NGMYGTCANN		 PBM
Weirauch et al.(2014)
pTH5816 		0.690 0.754
PK25034.1
M01254_2.00 		Cannabis sativa
NNTGACRKBN
NVMYGTCANN		 PBM
Lambert et al.(2019)
pTH11259 		0.611 0.649
TGIF2LX
M03171_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
TGIF2LX_1 		0.606 0.456
TGIF2LX
M05191_2.00 		Homo sapiens
TGACABVTGTCA
TGACABVTGTCA		 SELEX
Yin et al.(2017)
TGIF2LX_eDBD_HT-SELEX 		0.606 0.456
TGIF2LX
M05193_2.00 		Homo sapiens
TGACASSTGTCA
TGACASSTGTCA		 SELEX
Yin et al.(2017)
TGIF2LX_FL_HT-SELEX 		0.606 0.456
TGIF2LX
M05192_2.00 		Homo sapiens
TGACABVTGTCA
TGACABVTGTCA		 SELEX
Yin et al.(2017)
TGIF2LX_eDBD_Methyl-HT-SELEX 		0.606 0.456
TGIF2LX
M05194_2.00 		Homo sapiens
TGACASSTGTCA
TGACASSTGTCA		 SELEX
Yin et al.(2017)
TGIF2LX_FL_Methyl-HT-SELEX 		0.606 0.456
TGIF2LY
M05313_2.00 		Homo sapiens
TGACABVTGTCA
TGACABVTGTCA		 SELEX
Yin et al.(2017)
TGIF2LY_eDBD_HT-SELEX 		0.606 0.439
TGIF2LY
M05314_2.00 		Homo sapiens
YGACABVTGTCR
YGACABVTGTCR		 SELEX
Yin et al.(2017)
TGIF2LY_eDBD_Methyl-HT-SELEX 		0.606 0.439
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10001779m Homeodomain 239 299

Links

Other Homeodomain family TFs
Other Citrus clementina TFs

Invalid Input OrderBy

307 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action