Ciclev10009522m.g (Citrus clementina)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Ciclev10009522m.g T228378_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.705 0.600
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.705 0.600
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD

HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.705 0.564
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD

HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.705 0.564
ATHB-22
M02041_2.00
Arabidopsis thaliana
NNATAATWWWNNN

NNNWWWATTATNN
PBM
Weirauch et al.(2014)
pTH5883
0.674 0.509
ATHB-51
M00867_2.00
Arabidopsis thaliana
ATWATKNN

NNMATWAT
PBM
Franco-Zorrilla et al.(2014)
ATHB51
0.655 0.545
ATHB-51
M06927_2.00
Arabidopsis thaliana
DNCAATAATTGAD

HTCAATTATTGNH
Dap-seq
OMalley et al.(2016)
LMI1_col_a
0.655 0.545
ATHB-51
M06928_2.00
Arabidopsis thaliana
NDNCAATAATTGA

TCAATTATTGNHN
Dap-seq
OMalley et al.(2016)
LMI1_colamp_a
0.655 0.545
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10009522m Homeodomain 20 74

Links

Other Homeodomain family TFs
Other Citrus clementina TFs

170 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.867
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.748
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.742
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.742
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.742
TCM_031644 Theobroma cacao TCM_031644 I 0.742
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.741
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.741
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.741
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.739
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.739
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.738
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.735
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.729
mgf013301m Mimulus guttatus mgf013301m I 0.719
MDP0000146339 Malus domestica MDP0000146339 I 0.717
Pm011328 Prunus mume Pm011328 I 0.715
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.715
MDP0000909160 Malus domestica MDP0000909160 I 0.713
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.711
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.707
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.707
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.707
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.707
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.707
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.707
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.707
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.707
HAT7 Arabidopsis thaliana AT5G15150 I 0.707
Bra006285 Brassica rapa Bra006285 I 0.707
Bo2g012410 Brassica oleracea Bo2g012410 I 0.707
Bo3g010120 Brassica oleracea Bo3g010120 I 0.707
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.707
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.707
Bra023506 Brassica rapa Bra023506 I 0.707
Cla010510 Citrullus lanatus Cla010510 I 0.705
29822.m003500 Ricinus communis 29822.m003500 I 0.705
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.705
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.705
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.705
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.705
TCM_018470 Theobroma cacao TCM_018470 I 0.705
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.705
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.705
PK20392.1 Cannabis sativa PK20392.1 D 0.705
Ca_10527 Cicer arietinum Ca_10527 I 0.705
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.705
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.705
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.705
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.705
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.705
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.705
MDP0000124827 Malus domestica MDP0000124827 I 0.705
MDP0000737128 Malus domestica MDP0000737128 I 0.705
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.705
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.705
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.705
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.705
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.705
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.705
Pm015861 Prunus mume Pm015861 I 0.705
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.705
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.705
Bo1g158730 Brassica oleracea Bo1g158730 I 0.705
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.705
Bo9g165360 Brassica oleracea Bo9g165360 I 0.705
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.705
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.705
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.705
Bra008717 Brassica rapa Bra008717 I 0.705
Bra039135 Brassica rapa Bra039135 I 0.705
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.701
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.700
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.695
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.695
Bra022687 Brassica rapa Bra022687 I 0.691
Bo2g042250 Brassica oleracea Bo2g042250 I 0.691
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.690
Bo12274s010 Brassica oleracea Bo12274s010 I 0.689
mgf019824m Mimulus guttatus mgf019824m I 0.687
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.683
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.682
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.678
GLYMA12G18720 Glycine max GLYMA12G18720 I 0.678
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.676
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.674
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.664
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.662
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.661
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.656
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.656
mgf022748m Mimulus guttatus mgf022748m I 0.656
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.655
Bra009510 Brassica rapa Bra009510 I 0.655
Bo2g005230 Brassica oleracea Bo2g005230 I 0.655
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.655
Bo9g181720 Brassica oleracea Bo9g181720 I 0.655
Bra028820 Brassica rapa Bra028820 I 0.655
Bo3g002560 Brassica oleracea Bo3g002560 I 0.655
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.655
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.655
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.655
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.655
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.655
Cla018017 Citrullus lanatus Cla018017 I 0.655
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.653
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.653
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.651
mgf025174m Mimulus guttatus mgf025174m I 0.649
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.649
Cla018641 Citrullus lanatus Cla018641 I 0.649
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.647
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.647
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.645
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.642
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.641
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.641
29983.m003123 Ricinus communis 29983.m003123 I 0.638
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.638
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.638
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.638
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.637
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.633
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.633
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.629
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.627
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.625
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.625
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.623
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.623
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.623
PK15535.1 Cannabis sativa PK15535.1 I 0.623
MDP0000738604 Malus domestica MDP0000738604 I 0.623
MDP0000119544 Malus domestica MDP0000119544 I 0.623
MDP0000134241 Malus domestica MDP0000134241 I 0.623
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.623
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.623
Pm026270 Prunus mume Pm026270 I 0.623
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.623
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.623
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.623
29815.m000499 Ricinus communis 29815.m000499 I 0.623
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.623
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.623
TCM_022391 Theobroma cacao TCM_022391 I 0.623
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.623
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.623
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.623
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.623
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.623
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.623
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.622
Si030983m.g Setaria italica Si030983m.g I 0.622
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.622
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.622
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.622
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.622
M408DRAFT_332781 Serendipita vermifera M408DRAFT_332781 I 0.614
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.613
Bra018155 Brassica rapa Bra018155 I 0.613
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.612
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.612
Pm018314 Prunus mume Pm018314 I 0.612
Bra005259 Brassica rapa Bra005259 I 0.610
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.610
Bo4g034490 Brassica oleracea Bo4g034490 I 0.610
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.610
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.610
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.604
OBART10G09370 Oryza barthii OBART10G09370 I 0.601