CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10013382m.g
(
Citrus clementina
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Ciclev10013382m.g
T228386_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HAT22
M06926_2.00
Arabidopsis thaliana
NNYAATCATT
AATGATTRNN
Dap-seq
OMalley et al.(2016)
HAT22_col_a
0.634
0.737
HAT2
M06929_2.00
Arabidopsis thaliana
NHAATGATTRN
NYAATCATTDN
Dap-seq
OMalley et al.(2016)
HAT2_colamp_a
0.611
0.789
HAT2
M06930_2.00
Arabidopsis thaliana
WNYAATCATWD
HWATGATTRNW
Dap-seq
OMalley et al.(2016)
HAT2_col_v31
0.611
0.789
HAT1
M02047_2.00
Arabidopsis thaliana
NMATGATTRN
NYAATCATKN
PBM
Weirauch et al.(2014)
pTH8107
0.609
0.737
HAT1
M06922_2.00
Arabidopsis thaliana
NHAATGATTRNNWDW
WHWNNYAATCATTDN
Dap-seq
OMalley et al.(2016)
HAT1_col_a
0.609
0.737
HAT1
M06923_2.00
Arabidopsis thaliana
NYAATCATTDN
NHAATGATTRN
Dap-seq
OMalley et al.(2016)
HAT1_colamp_a
0.609
0.737
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10013382m
Homeodomain
138
194
NKNKEKGEKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKL
Links
Other
Homeodomain
family TFs
Other
Citrus clementina
TFs
486 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy