Ciclev10014094m.g (Citrus clementina)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Ciclev10014094m.g T228389_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.671 0.429
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.671 0.429
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.671 0.429
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.671 0.429
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.609 0.429
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10014094m Homeodomain 1 28

Links

Other Homeodomain family TFs
Other Citrus clementina TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMAG_20076 Allomyces macrogynus AMAG_20076 I 0.708
SROB_0002390501 Schistosoma rodhaini SROB_0002390501 I 0.701
ENSTGUG00000002359 Taeniopygia guttata ENSTGUG00000002359 I 0.685
SMRZ_0002528201 Schistosoma margrebowiei SMRZ_0002528201 I 0.685
T265_13413 Opisthorchis viverrini T265_13413 I 0.680
MEIS3 Pteropus vampyrus ENSPVAG00000004023 I 0.679
MESCA005372 Megaselia scalaris MESCA005372 I 0.679
ENSEEUG00000006123 Erinaceus europaeus ENSEEUG00000006123 I 0.679
Smp_147790 Schistosoma mansoni Smp_147790 I 0.679
OFLC_0001361601 Onchocerca flexuosa OFLC_0001361601 I 0.678
NCAS_0D03570 Naumovozyma castellii NCAS_0D03570 I 0.677
HNAJ_0001355001 Hymenolepis nana HNAJ_0001355001 I 0.675
TsM_001128900 Taenia solium TsM_001128900 I 0.675
Ogr07386 Ophisaurus gracilis Ogr07386 I 0.675
pknox1.2 Danio rerio ENSDARG00000036542 I 0.675
Alligator_sinensis_CCG016844.1 Alligator sinensis Alligator_sinensis_CCG016844.1 I 0.675
Myotis_brandtii_PKNOX1_10016558 Myotis brandtii Myotis_brandtii_PKNOX1_10016558 I 0.675
NAPIS_ORF00602 Nosema apis NAPIS_ORF00602 I 0.673
MhA1_Contig274.frz3.gene11 Meloidogyne hapla MhA1_Contig274.frz3.gene11 I 0.672
MCOS_0000961001 Mesocestoides corti MCOS_0000961001 I 0.671
SMRZ_0000594901 Schistosoma margrebowiei SMRZ_0000594901 I 0.671
SMTD_0001019201 Schistosoma mattheei SMTD_0001019201 I 0.671
HmN_000588700 Hymenolepis microstoma HmN_000588700 I 0.671
PXEA_0001804101 Protopolystoma xenopodis PXEA_0001804101 I 0.671
nRc.2.0.1.g39805 Romanomermis culicivorax nRc.2.0.1.g39805 I 0.671
EmuJ_000903300 Echinococcus multilocularis EmuJ_000903300 I 0.671
SMU15015009 Schmidtea mediterranea SMU15015009 I 0.671
Sjc_0112890 Schistosoma japonicum Sjc_0112890 I 0.671
Sjc_0088150 Schistosoma japonicum Sjc_0088150 I 0.671
unc-62 Caenorhabditis elegans WBGene00006796 D 0.671
Smp_146580 Schistosoma mansoni Smp_146580 I 0.671
A_04094 Schistosoma haematobium A_04094 I 0.671
SPER_0002540301 Spirometra erinaceieuropaei SPER_0002540301 I 0.671
ECANG7_02844 Echinococcus canadensis ECANG7_02844 I 0.671
D915_03380 Fasciola hepatica D915_03380 I 0.671
csin100426 Clonorchis sinensis csin100426 I 0.671
HDID_0001012401 Hymenolepis diminuta HDID_0001012401 I 0.671
SCUD_0001480501 Schistosoma curassoni SCUD_0001480501 I 0.671
TsM_001060900 Taenia solium TsM_001060900 I 0.671
TRE_0000165201 Trichobilharzia regenti TRE_0000165201 I 0.671
MEIS3 Homo sapiens ENSG00000105419 D 0.671
ENSAMEG00000008199 Ailuropoda melanoleuca ENSAMEG00000008199 I 0.671
MEIS3 Pan troglodytes ENSPTRG00000011208 I 0.671
TTAC_0000164401 Hydatigera taeniaeformis TTAC_0000164401 I 0.671
ENSLOCG00000014306 Lepisosteus oculatus ENSLOCG00000014306 I 0.671
MEIS3 Procavia capensis ENSPCAG00000016512 I 0.671
TASK_0000172901 Taenia asiatica TASK_0000172901 I 0.671
ENSETEG00000009874 Echinops telfairi ENSETEG00000009874 I 0.671
Meis3 Dipodomys ordii ENSDORG00000008441 I 0.671
SPER_0003054301 Spirometra erinaceieuropaei SPER_0003054301 I 0.671
SPER_0002811001 Spirometra erinaceieuropaei SPER_0002811001 I 0.671
MEIS3 Canis familiaris ENSCAFG00000004161 I 0.671
SSLN_0000616201 Schistocephalus solidus SSLN_0000616201 I 0.671
ENSNLEG00000003031 Nomascus leucogenys ENSNLEG00000003031 I 0.671
T265_13466 Opisthorchis viverrini T265_13466 I 0.671
ENSEEUG00000012324 Erinaceus europaeus ENSEEUG00000012324 I 0.670
UHOR_00760 Ustilago hordei UHOR_00760 I 0.670
ENSOCUG00000027741 Oryctolagus cuniculus ENSOCUG00000027741 I 0.670
PaG_02045 Pseudozyma aphidis PaG_02045 I 0.670
PFL1_06120 Pseudozyma flocculosa PFL1_06120 I 0.670
MEIS3 Tursiops truncatus ENSTTRG00000002278 I 0.670
HHAL007363-PA Halyomorpha halys HHAL007363-PA I 0.669
UM00489 Ustilago maydis UM00489 I 0.668
sr10177.2 Sporisorium reilianum sr10177.2 I 0.668
PHSY_000883 Pseudozyma hubeiensis PHSY_000883 I 0.668
ASIM_0001141701 Anisakis simplex ASIM_0001141701 I 0.668
pknox1.2 Oryzias latipes ENSORLG00000020833 I 0.667
ISCW011271 Ixodes scapularis ISCW011271 I 0.667
Alligator_sinensis_CCG019581.1 Alligator sinensis Alligator_sinensis_CCG019581.1 I 0.667
Sjc_0049050 Schistosoma japonicum Sjc_0049050 I 0.667
A_02308 Schistosoma haematobium A_02308 I 0.665
SCUD_0000036001 Schistosoma curassoni SCUD_0000036001 I 0.665
AMSG_02417 Thecamonas trahens AMSG_02417 I 0.648
ENSCJAG00000033917 Callithrix jacchus ENSCJAG00000033917 I 0.641
GSMUA_Achr8G05110_001 Musa acuminata GSMUA_Achr8G05110_001 I 0.630
MLOC_3638 Hordeum vulgare MLOC_3638 I 0.630
GM20354 Drosophila sechellia FBgn0175237 I 0.624
PSEUBRA_SCAF3g03946 Pseudozyma brasiliensis PSEUBRA_SCAF3g03946 I 0.624
cassava41616.m1 Manihot esculenta cassava41616.m1 I 0.620
Traes_4DS_71AA74F78 Triticum aestivum Traes_4DS_71AA74F78 I 0.620
PGSC0003DMG400004953 Solanum tuberosum PGSC0003DMG400004953 I 0.620
OLONG_016590 Oryza longistaminata OLONG_016590 I 0.620
OLONG_002512 Oryza longistaminata OLONG_002512 I 0.620
TRIUR3_30726 Triticum urartu TRIUR3_30726 I 0.620
SELMODRAFT_451273 Selaginella moellendorffii SELMODRAFT_451273 I 0.620
PTSG_05049 Salpingoeca rosetta PTSG_05049 I 0.619
orange1.1g001088m.g Citrus sinensis orange1.1g001088m.g N 0.619
PDK_20s1378761g001 Phoenix dactylifera PDK_20s1378761g001 I 0.615
ORUFI12G04260 Oryza rufipogon ORUFI12G04260 I 0.613
ASU_08145 Ascaris suum ASU_08145 I 0.612
PTTG_07356 Puccinia triticina PTTG_07356 I 0.612
PGTG_00378 Puccinia graminis PGTG_00378 I 0.612
Pavir.J13578 Panicum virgatum Pavir.J13578 I 0.612
M413DRAFT_23455 Hebeloma cylindrosporum M413DRAFT_23455 I 0.610
MDP0000233192 Malus domestica MDP0000233192 I 0.609
Traes_1BL_0E29B6971 Triticum aestivum Traes_1BL_0E29B6971 I 0.609
BGIOSGA009880 Oryza indica BGIOSGA009880 I 0.609
CC1G_02962 Coprinopsis cinerea CC1G_02962 I 0.609
Q5EVH4_OIKDI Oikopleura dioica Q5EVH4_OIKDI D 0.609
SMU15027772 Schmidtea mediterranea SMU15027772 I 0.609
GSMUA_Achr10G02340_001 Musa acuminata GSMUA_Achr10G02340_001 I 0.609
MELLADRAFT_86714 Melampsora laricipopulina MELLADRAFT_86714 I 0.608
ENSSTOG00000026042 Ictidomys tridecemlineatus ENSSTOG00000026042 I 0.608
ENSNLEG00000002908 Nomascus leucogenys ENSNLEG00000002908 I 0.608
ONIVA03G30930 Oryza nivara ONIVA03G30930 I 0.607
Gorai.008G296800 Gossypium raimondii Gorai.008G296800 I 0.607
OMERI03G25970 Oryza meridionalis OMERI03G25970 I 0.607
OLONG_026942 Oryza longistaminata OLONG_026942 I 0.607
OS03G0680700 Oryza sativa OS03G0680700 I 0.607
BGIOSGA010052 Oryza indica BGIOSGA010052 I 0.607
OGLUM03G29920 Oryza glumaepatula OGLUM03G29920 I 0.607
Pavir.Ia00979 Panicum virgatum Pavir.Ia00979 I 0.607
ORGLA03G0273800 Oryza glaberrima ORGLA03G0273800 I 0.607
ORUFI03G30870 Oryza rufipogon ORUFI03G30870 I 0.607
pknox1.2 Takifugu rubripes ENSTRUG00000001997 I 0.604
ORUFI03G37080 Oryza rufipogon ORUFI03G37080 I 0.604
YQE_11947 Dendroctonus ponderosae YQE_11947 I 0.604
PDK_20s1445341g001 Phoenix dactylifera PDK_20s1445341g001 I 0.604
F775_17983 Aegilops tauschii F775_17983 I 0.603
Traes_4AL_405CA738F Triticum aestivum Traes_4AL_405CA738F I 0.603
Traes_7BL_7E32A8329 Triticum aestivum Traes_7BL_7E32A8329 I 0.603
evm.TU.supercontig_56.56 Carica papaya evm.TU.supercontig_56.56 I 0.603
TRIUR3_16344 Triticum urartu TRIUR3_16344 I 0.603
GRMZM2G064466 Zea mays GRMZM2G064466 I 0.603
GSMUA_Achr5G03140_001 Musa acuminata GSMUA_Achr5G03140_001 I 0.603
MLOC_73862 Hordeum vulgare MLOC_73862 I 0.603
ONIVA10G18590 Oryza nivara ONIVA10G18590 I 0.603
Bo1g008580 Brassica oleracea Bo1g008580 I 0.603
OPUNC10G15240 Oryza punctata OPUNC10G15240 I 0.603
OGLUM10G16890 Oryza glumaepatula OGLUM10G16890 I 0.603
PDK_20s1302101g001 Phoenix dactylifera PDK_20s1302101g001 I 0.603