Ciclev10016895m.g (Citrus clementina)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Ciclev10016895m.g T228398_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q39944_HELAN
M10802_2.00 		Helianthus annuus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HAHB4_01 		0.625 0.439
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.602 0.509
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.602 0.509
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10016895m Homeodomain 14 70

Links

Other Homeodomain family TFs
Other Citrus clementina TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc03g034110.2 Solanum lycopersicum Solyc03g034110.2 I 0.692
PGSC0003DMG400017787 Solanum tuberosum PGSC0003DMG400017787 I 0.692
PGSC0003DMG400017776 Solanum tuberosum PGSC0003DMG400017776 I 0.692
PGSC0003DMG400017775 Solanum tuberosum PGSC0003DMG400017775 I 0.692
Solyc03g034130.2 Solanum lycopersicum Solyc03g034130.2 I 0.686
Solyc03g034120.2 Solanum lycopersicum Solyc03g034120.2 I 0.681
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.643
MDP0000909160 Malus domestica MDP0000909160 I 0.628
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.627
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.627
TCM_031644 Theobroma cacao TCM_031644 I 0.627
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.626
Q39944_HELAN Helianthus annuus Q39944_HELAN D 0.625
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.624
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.624
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.608
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.606
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.605
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.604
Bo2g012410 Brassica oleracea Bo2g012410 I 0.604
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.604
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.604
HAT7 Arabidopsis thaliana AT5G15150 I 0.604
Bo3g010120 Brassica oleracea Bo3g010120 I 0.604
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.604
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.604
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.604
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.604
Bra023506 Brassica rapa Bra023506 I 0.604
Bra006285 Brassica rapa Bra006285 I 0.604
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.603
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.602
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.602
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.602
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.602
PK20392.1 Cannabis sativa PK20392.1 D 0.602
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.602
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.602
MDP0000737128 Malus domestica MDP0000737128 I 0.602
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.602
MDP0000124827 Malus domestica MDP0000124827 I 0.602
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.602
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.602
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.602
evm.TU.supercontig_83.103 Carica papaya evm.TU.supercontig_83.103 N 0.602
29822.m003500 Ricinus communis 29822.m003500 I 0.602
Bo9g165360 Brassica oleracea Bo9g165360 I 0.602
TCM_018470 Theobroma cacao TCM_018470 I 0.602
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.602
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.602
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.602
Bra008717 Brassica rapa Bra008717 I 0.602
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.602
Bo12274s010 Brassica oleracea Bo12274s010 I 0.602
Ca_10527 Cicer arietinum Ca_10527 I 0.602
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.602
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.602
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.602
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.602
Cla010510 Citrullus lanatus Cla010510 I 0.602
Pm015861 Prunus mume Pm015861 I 0.602
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.602
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.601
29983.m003123 Ricinus communis 29983.m003123 I 0.601
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.600