Eucgr.A01421 (Eucalyptus grandis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Eucgr.A01421 T228437_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.688 0.596
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.688 0.596
ATHB-22
M02041_2.00
Arabidopsis thaliana
NNATAATWWWNNN

NNNWWWATTATNN
PBM
Weirauch et al.(2014)
pTH5883
0.679 0.526
ATHB-12
M00865_2.00
Arabidopsis thaliana
NNNNNNNN

NNNNNNNN
PBM
Franco-Zorrilla et al.(2014)
ATHB12
0.675 0.649
ATHB-12
M02045_2.00
Arabidopsis thaliana
BHWWWWWWDV

BHWWWWWWDV
PBM
Weirauch et al.(2014)
pTH7207
0.675 0.649
ATHB-51
M00867_2.00
Arabidopsis thaliana
ATWATKNN

NNMATWAT
PBM
Franco-Zorrilla et al.(2014)
ATHB51
0.670 0.544
ATHB-51
M06927_2.00
Arabidopsis thaliana
DNCAATAATTGAD

HTCAATTATTGNH
Dap-seq
OMalley et al.(2016)
LMI1_col_a
0.670 0.544
ATHB-51
M06928_2.00
Arabidopsis thaliana
NDNCAATAATTGA

TCAATTATTGNHN
Dap-seq
OMalley et al.(2016)
LMI1_colamp_a
0.670 0.544
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD

HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.667 0.544
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD

HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.667 0.544
Q39944_HELAN
M10802_2.00
Helianthus annuus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HAHB4_01
0.632 0.579
ATHB-7
M02043_2.00
Arabidopsis thaliana
NHWTGATTGN

NCAATCAWDN
PBM
Weirauch et al.(2014)
pTH8090
0.599 0.719
ATHB-7
M06911_2.00
Arabidopsis thaliana
NHYCAATCATTSW

WSAATGATTGRDN
Dap-seq
OMalley et al.(2016)
ATHB7_col_a
0.599 0.719
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.A01421.1 Homeodomain 20 76

Links

Other Homeodomain family TFs
Other Eucalyptus grandis TFs

249 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.670
PK20392.1 Cannabis sativa PK20392.1 D 0.688
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.679
ATHB-7 Arabidopsis thaliana AT2G46680 D 0.599
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.667
ATHB-12 Arabidopsis thaliana AT3G61890 D 0.675
Q39944_HELAN Helianthus annuus Q39944_HELAN D 0.632
Cagra.0483s0055 Capsella grandiflora Cagra.0483s0055 I 0.643
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.689
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.667
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.655
evm.TU.supercontig_3.138 Carica papaya evm.TU.supercontig_3.138 I 0.616
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.689
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.670
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.679
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.670
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.689
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.655
Bostr.25993s0098 Boechera stricta Bostr.25993s0098 I 0.599
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.679
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.670
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.670
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.667
evm.TU.supercontig_144.7 Carica papaya evm.TU.supercontig_144.7 I 0.615
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.688
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.677
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.688
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.664
Ciclev10022365m.g Citrus clementina Ciclev10022365m.g I 0.623
Ciclev10021877m.g Citrus clementina Ciclev10021877m.g I 0.617
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.703
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.688
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.655
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.679
Carubv10017952m.g Capsella rubella Carubv10017952m.g I 0.643
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.670
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.667
Bostr.13158s0194 Boechera stricta Bostr.13158s0194 I 0.643
cassava29430.valid.m1 Manihot esculenta cassava29430.valid.m1 I 0.620
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.679
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.688
30089.m001006 Ricinus communis 30089.m001006 I 0.657
29983.m003123 Ricinus communis 29983.m003123 I 0.658
29822.m003500 Ricinus communis 29822.m003500 I 0.688
29815.m000499 Ricinus communis 29815.m000499 I 0.679
27964.m000347 Ricinus communis 27964.m000347 I 0.620
Pm026270 Prunus mume Pm026270 I 0.679
Pm018314 Prunus mume Pm018314 I 0.759
Pm015861 Prunus mume Pm015861 I 0.688
Pm011328 Prunus mume Pm011328 I 0.646
cassava29431.valid.m1 Manihot esculenta cassava29431.valid.m1 I 0.620
cassava29803.valid.m1 Manihot esculenta cassava29803.valid.m1 I 0.610
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.679
Aquca_013_00021 Aquilegia coerulea Aquca_013_00021 I 0.620
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.755
mgf025174m Mimulus guttatus mgf025174m I 0.642
mgf022748m Mimulus guttatus mgf022748m I 0.681
mgf020022m Mimulus guttatus mgf020022m I 0.641
mgf019824m Mimulus guttatus mgf019824m I 0.679
mgf013301m Mimulus guttatus mgf013301m I 0.643
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.679
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.688
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.679
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.688
cassava39514.m1 Manihot esculenta cassava39514.m1 I 0.638
Cla018641 Citrullus lanatus Cla018641 I 0.679
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.679
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.679
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.676
SapurV1A.0162s0050 Salix purpurea SapurV1A.0162s0050 I 0.620
SapurV1A.0003s0740 Salix purpurea SapurV1A.0003s0740 I 0.620
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.655
Pavir.Ga00670 Panicum virgatum Pavir.Ga00670 I 0.623
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.755
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.755
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.688
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.703
orange1.1g029280m.g Citrus sinensis orange1.1g029280m.g I 0.623
orange1.1g025886m.g Citrus sinensis orange1.1g025886m.g I 0.617
MDP0000909160 Malus domestica MDP0000909160 I 0.676
MDP0000738604 Malus domestica MDP0000738604 I 0.679
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.679
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.688
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.688
PK15571.1 Cannabis sativa PK15571.1 I 0.679
PK15535.1 Cannabis sativa PK15535.1 I 0.667
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.667
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.659
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.659
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.655
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.670
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.689
Thhalv10006221m.g Eutrema salsugineum Thhalv10006221m.g I 0.702
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.658
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.658
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.688
MDP0000737128 Malus domestica MDP0000737128 I 0.688
MDP0000316497 Malus domestica MDP0000316497 I 0.674
Gorai.007G111400 Gossypium raimondii Gorai.007G111400 I 0.615
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.688
Gorai.004G123500 Gossypium raimondii Gorai.004G123500 I 0.638
Gorai.004G123100 Gossypium raimondii Gorai.004G123100 I 0.616
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.679
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.712
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.675
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.688
Gorai.001G152200 Gossypium raimondii Gorai.001G152200 I 0.647
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.667
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.688
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.625
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.824
Gorai.008G128000 Gossypium raimondii Gorai.008G128000 I 0.621
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.679
MDP0000311522 Malus domestica MDP0000311522 I 0.726
MDP0000146339 Malus domestica MDP0000146339 I 0.644
MDP0000134241 Malus domestica MDP0000134241 I 0.680
MDP0000124827 Malus domestica MDP0000124827 I 0.688
MDP0000119544 Malus domestica MDP0000119544 I 0.679
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.679
Lus10032952.g Linum usitatissimum Lus10032952.g I 0.621
Lus10030214.g Linum usitatissimum Lus10030214.g I 0.620
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.643
Lus10008840.g Linum usitatissimum Lus10008840.g I 0.621
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.679
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.643
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.616
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.663
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.688
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.679
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.654
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.679
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.687
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.699
GLYMA06G13890 Glycine max GLYMA06G13890 I 0.626
GLYMA04G40960 Glycine max GLYMA04G40960 I 0.626
GLYMA03G34710 Glycine max GLYMA03G34710 I 0.680
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.686
ATHB-12 Arabidopsis lyrata fgenesh2_kg.5__2686__AT3G61890.1 I 0.675
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.689
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.670
F775_29232 Aegilops tauschii F775_29232 I 0.623
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.687
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.688
MTR_3g092150 Medicago truncatula MTR_3g092150 I 0.626
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.697
MLOC_70350 Hordeum vulgare MLOC_70350 I 0.623
LPERR04G16440 Leersia perrieri LPERR04G16440 I 0.623
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.688
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.683
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.689
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.689
GRMZM2G396527 Zea mays GRMZM2G396527 I 0.623
GRMZM2G351330 Zea mays GRMZM2G351330 I 0.623
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.755
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.719
GLYMA19G37380 Glycine max GLYMA19G37380 I 0.680
BRADI5G17170 Brachypodium distachyon BRADI5G17170 I 0.623
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.760
Bra039135 Brassica rapa Bra039135 I 0.667
Bo4g007060 Brassica oleracea Bo4g007060 I 0.605
Bo3g010120 Brassica oleracea Bo3g010120 I 0.689
Bo3g002560 Brassica oleracea Bo3g002560 I 0.670
Bo2g042250 Brassica oleracea Bo2g042250 I 0.655
Bo2g012410 Brassica oleracea Bo2g012410 I 0.689
Bo2g005230 Brassica oleracea Bo2g005230 I 0.658
Bo1g158730 Brassica oleracea Bo1g158730 I 0.667
Bo12274s010 Brassica oleracea Bo12274s010 I 0.654
BGIOSGA016852 Oryza indica BGIOSGA016852 I 0.623
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.686
HAT7 Arabidopsis thaliana AT5G15150 I 0.689
AMTR_s00040p00235500 Amborella trichopoda AMTR_s00040p00235500 I 0.609
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.707
Bo4g034490 Brassica oleracea Bo4g034490 I 0.679
Bo4g100070 Brassica oleracea Bo4g100070 I 0.669
Bra028820 Brassica rapa Bra028820 I 0.658
Bra023506 Brassica rapa Bra023506 I 0.689
Bra022687 Brassica rapa Bra022687 I 0.655
Bra014417 Brassica rapa Bra014417 I 0.655
Bra009510 Brassica rapa Bra009510 I 0.670
Bra008717 Brassica rapa Bra008717 I 0.688
Bra007637 Brassica rapa Bra007637 I 0.675
Bra006285 Brassica rapa Bra006285 I 0.689
Bra005259 Brassica rapa Bra005259 I 0.679
Bra004516 Brassica rapa Bra004516 I 0.605
Bo9g181720 Brassica oleracea Bo9g181720 I 0.670
Bo9g165360 Brassica oleracea Bo9g165360 I 0.688
Bo8g097390 Brassica oleracea Bo8g097390 I 0.675
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.673
Cla018017 Citrullus lanatus Cla018017 I 0.679
TCM_031644 Theobroma cacao TCM_031644 I 0.675
TCM_022391 Theobroma cacao TCM_022391 I 0.679
TCM_018470 Theobroma cacao TCM_018470 I 0.688
TCM_015645 Theobroma cacao TCM_015645 I 0.606
TCM_015486 Theobroma cacao TCM_015486 I 0.626
TCM_005074 Theobroma cacao TCM_005074 I 0.615
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.681
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.655
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.606
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.630
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.723
Si030983m.g Setaria italica Si030983m.g I 0.755
Si010550m.g Setaria italica Si010550m.g I 0.623
Traes_2BL_B69300543 Triticum aestivum Traes_2BL_B69300543 I 0.623
VIT_02s0025g02590 Vitis vinifera VIT_02s0025g02590 I 0.623
Cla010510 Citrullus lanatus Cla010510 I 0.688
Cla002451 Citrullus lanatus Cla002451 I 0.627
Ca_20151 Cicer arietinum Ca_20151 I 0.603
Ca_17608 Cicer arietinum Ca_17608 I 0.669
Ca_10527 Cicer arietinum Ca_10527 I 0.688
Ca_04027 Cicer arietinum Ca_04027 I 0.658
Ca_00750 Cicer arietinum Ca_00750 I 0.648
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.655
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.695
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.690
VIT_15s0048g02870 Vitis vinifera VIT_15s0048g02870 I 0.623
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.677
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.681
scaffold_403640.1 Arabidopsis lyrata scaffold_403640.1 I 0.599
scaffold_403638.1 Arabidopsis lyrata scaffold_403638.1 I 0.599
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.667
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.723
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.634
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.630
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.600
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.681
ORUFI04G21910 Oryza rufipogon ORUFI04G21910 I 0.623
ORGLA04G0173700 Oryza glaberrima ORGLA04G0173700 I 0.623
OPUNC04G17950 Oryza punctata OPUNC04G17950 I 0.623
ONIVA04G18550 Oryza nivara ONIVA04G18550 I 0.623
OGLUM04G20240 Oryza glumaepatula OGLUM04G20240 I 0.623
OBART04G20320 Oryza barthii OBART04G20320 I 0.623
OB04G27300 Oryza brachyantha OB04G27300 I 0.627
MTR_8g026960 Medicago truncatula MTR_8g026960 I 0.669
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.658
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.676
Sb06g024000 Sorghum bicolor Sb06g024000 I 0.623
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.755
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.688
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.646
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.679
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.759
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.688
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.658
POPTR_0014s09860 Populus trichocarpa POPTR_0014s09860 I 0.620
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.643
POPTR_0007s01370 Populus trichocarpa POPTR_0007s01370 I 0.619
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.679
POPTR_0002s17680 Populus trichocarpa POPTR_0002s17680 I 0.620
MTR_7g103340 Medicago truncatula MTR_7g103340 I 0.648