Eucgr.A01575 (Eucalyptus grandis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Eucgr.A01575 T228438_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATHB-22
M02041_2.00
Arabidopsis thaliana
NNATAATWWWNNN

NNNWWWATTATNN
PBM
Weirauch et al.(2014)
pTH5883
0.750 0.750
ATHB-51
M00867_2.00
Arabidopsis thaliana
ATWATKNN

NNMATWAT
PBM
Franco-Zorrilla et al.(2014)
ATHB51
0.737 0.804
ATHB-51
M06927_2.00
Arabidopsis thaliana
DNCAATAATTGAD

HTCAATTATTGNH
Dap-seq
OMalley et al.(2016)
LMI1_col_a
0.737 0.804
ATHB-51
M06928_2.00
Arabidopsis thaliana
NDNCAATAATTGA

TCAATTATTGNHN
Dap-seq
OMalley et al.(2016)
LMI1_colamp_a
0.737 0.804
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.714 0.643
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.714 0.643
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD

HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.694 0.625
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD

HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.694 0.625
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.A01575.1 Homeodomain 64 119

Links

Other Homeodomain family TFs
Other Eucalyptus grandis TFs

177 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.737
PK20392.1 Cannabis sativa PK20392.1 D 0.714
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.750
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.694
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.728
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.694
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.705
Carubv10002831m.g Capsella rubella Carubv10002831m.g I 0.639
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.737
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.714
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.651
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.694
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.714
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.651
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.613
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.648
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.681
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.711
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.714
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.696
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.706
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.664
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.707
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.714
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.705
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.728
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.737
mgf013301m Mimulus guttatus mgf013301m I 0.607
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.748
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.714
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.730
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.714
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.713
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.747
29983.m003123 Ricinus communis 29983.m003123 I 0.637
mgf019824m Mimulus guttatus mgf019824m I 0.736
mgf022748m Mimulus guttatus mgf022748m I 0.743
mgf025174m Mimulus guttatus mgf025174m I 0.603
Cagra.0154s0024 Capsella grandiflora Cagra.0154s0024 I 0.641
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.714
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.620
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.728
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.737
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I 0.644
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.694
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.655
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.714
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.729
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.714
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.702
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.629
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.625
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.654
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.654
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.714
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.707
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.714
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.637
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.641
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.714
PK15535.1 Cannabis sativa PK15535.1 I 0.733
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.694
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.739
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.691
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.620
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.737
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.714
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.613
MDP0000909160 Malus domestica MDP0000909160 I 0.627
MDP0000738604 Malus domestica MDP0000738604 I 0.748
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.713
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.714
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.747
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.710
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.629
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.692
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.701
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.714
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.638
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.629
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.713
MDP0000737128 Malus domestica MDP0000737128 I 0.714
MDP0000311522 Malus domestica MDP0000311522 I 0.648
MDP0000146339 Malus domestica MDP0000146339 I 0.627
MDP0000134241 Malus domestica MDP0000134241 I 0.748
MDP0000124827 Malus domestica MDP0000124827 I 0.714
MDP0000119544 Malus domestica MDP0000119544 I 0.748
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.713
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.629
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.609
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.711
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.711
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.714
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.649
GLYMA03G34710 Glycine max GLYMA03G34710 I 0.614
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.620
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.714
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.737
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.685
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.714
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.711
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.714
M408DRAFT_332781 Serendipita vermifera M408DRAFT_332781 I 0.618
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.692
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.708
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.714
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.714
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.654
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.654
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.714
Bra039135 Brassica rapa Bra039135 I 0.694
Bra028820 Brassica rapa Bra028820 I 0.721
Bra023506 Brassica rapa Bra023506 I 0.714
Bo2g012410 Brassica oleracea Bo2g012410 I 0.714
Bo2g005230 Brassica oleracea Bo2g005230 I 0.721
Bo1g158730 Brassica oleracea Bo1g158730 I 0.694
Bo12274s010 Brassica oleracea Bo12274s010 I 0.672
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.620
HAT7 Arabidopsis thaliana AT5G15150 I 0.714
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.648
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I 0.646
Bo2g042250 Brassica oleracea Bo2g042250 I 0.620
Bo3g002560 Brassica oleracea Bo3g002560 I 0.733
Bo3g010120 Brassica oleracea Bo3g010120 I 0.714
Bra022687 Brassica rapa Bra022687 I 0.620
Bra009510 Brassica rapa Bra009510 I 0.737
Bra008717 Brassica rapa Bra008717 I 0.714
Bra006285 Brassica rapa Bra006285 I 0.714
Bra005259 Brassica rapa Bra005259 I 0.719
Bo9g181720 Brassica oleracea Bo9g181720 I 0.737
Bo9g165360 Brassica oleracea Bo9g165360 I 0.714
Bo4g034490 Brassica oleracea Bo4g034490 I 0.719
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.714
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.714
29822.m003500 Ricinus communis 29822.m003500 I 0.714
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.721
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.624
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.609
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.733
TCM_031644 Theobroma cacao TCM_031644 I 0.629
TCM_022391 Theobroma cacao TCM_022391 I 0.711
TCM_018470 Theobroma cacao TCM_018470 I 0.714
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.779
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.641
Ca_10527 Cicer arietinum Ca_10527 I 0.714
Ca_20151 Cicer arietinum Ca_20151 I 0.691
29815.m000499 Ricinus communis 29815.m000499 I 0.716
Pm026270 Prunus mume Pm026270 I 0.745
Pm018314 Prunus mume Pm018314 I 0.648
Pm015861 Prunus mume Pm015861 I 0.714
Pm011328 Prunus mume Pm011328 I 0.629
Cla018641 Citrullus lanatus Cla018641 I 0.730
Cla018017 Citrullus lanatus Cla018017 I 0.748
Cla010510 Citrullus lanatus Cla010510 I 0.714
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.621
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.621
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.600
POPTR_0007s01370 Populus trichocarpa POPTR_0007s01370 I 0.630
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.716
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.629
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.620
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.630
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.599
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.600
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.615
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.629
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.637
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.714
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.630
Si030983m.g Setaria italica Si030983m.g I 0.654
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.694
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.654
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.714
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.629
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.744
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.648
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.779